miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 29896 0.7 0.489469
Target:  5'- aGCAGAUugCUACGGgcCGGGCGGGugACGCUa -3'
miRNA:   3'- gCGUCUA--GGUGUC--GCUCGUCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29738 0.76 0.226166
Target:  5'- gGCAGcuaCGCgGGCGAGCuGGACGCCg -3'
miRNA:   3'- gCGUCuagGUG-UCGCUCGuCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29498 0.67 0.674357
Target:  5'- gCGCGGG-CCGCuGCG-GCGGccuccuccuGCGCCc -3'
miRNA:   3'- -GCGUCUaGGUGuCGCuCGUCu--------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29458 0.68 0.607977
Target:  5'- uCGC-GAUCgAgaacggcgcCAGCGAGCAGGGCacgGCCc -3'
miRNA:   3'- -GCGuCUAGgU---------GUCGCUCGUCUUG---CGG- -5'
12910 5' -54.8 NC_003387.1 + 29415 0.66 0.74976
Target:  5'- gCGCAGGaggaggccgCCGCAGCGGcccgcGCGGu-CGCUa -3'
miRNA:   3'- -GCGUCUa--------GGUGUCGCU-----CGUCuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29293 0.66 0.739258
Target:  5'- aCGCccuGuUCCcCGGCGAccgcggGCAcGAGCGCCa -3'
miRNA:   3'- -GCGu--CuAGGuGUCGCU------CGU-CUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 28860 0.72 0.373084
Target:  5'- uGCGGGUCggacuggUACcGCGAGCGGcacGGCGCCg -3'
miRNA:   3'- gCGUCUAG-------GUGuCGCUCGUC---UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 28223 0.66 0.728647
Target:  5'- gCGCAGccgCgACGGCucgaccGAGCAGAuCGUCg -3'
miRNA:   3'- -GCGUCua-GgUGUCG------CUCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 28033 0.7 0.458933
Target:  5'- aGCcGAUCCuCGGCGAGCuG-ACGaCCa -3'
miRNA:   3'- gCGuCUAGGuGUCGCUCGuCuUGC-GG- -5'
12910 5' -54.8 NC_003387.1 + 27855 0.69 0.525177
Target:  5'- cCGCGGcgCCACgaucgacaccggcgcGGuCGAGCAGGA-GCCc -3'
miRNA:   3'- -GCGUCuaGGUG---------------UC-GCUCGUCUUgCGG- -5'
12910 5' -54.8 NC_003387.1 + 27669 0.66 0.739258
Target:  5'- gGCAGuAUCuCGCAGCucuGGCGcGAgugcuGCGCCg -3'
miRNA:   3'- gCGUC-UAG-GUGUCGc--UCGU-CU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 27525 0.75 0.264492
Target:  5'- gGCAGGUCgCACAuCGGGCAGucaGCCa -3'
miRNA:   3'- gCGUCUAG-GUGUcGCUCGUCuugCGG- -5'
12910 5' -54.8 NC_003387.1 + 27484 0.66 0.717938
Target:  5'- gCGguGGUgC-CAGCGcGCgucguacacagAGAACGCCg -3'
miRNA:   3'- -GCguCUAgGuGUCGCuCG-----------UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 27266 0.69 0.553134
Target:  5'- gGCAug-CCugGucgcGCGAGgAGAACGCCg -3'
miRNA:   3'- gCGUcuaGGugU----CGCUCgUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26921 0.72 0.38287
Target:  5'- aGguGcAUCCACAGCucgccGAGCAGGcccaagAUGCCa -3'
miRNA:   3'- gCguC-UAGGUGUCG-----CUCGUCU------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26792 0.66 0.717938
Target:  5'- cCGCAG--CCAU-GUGGGUguGGGGCGCCg -3'
miRNA:   3'- -GCGUCuaGGUGuCGCUCG--UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26515 0.69 0.542323
Target:  5'- uCGC-GAUCCACGGCGugAGCuGcuCGUCg -3'
miRNA:   3'- -GCGuCUAGGUGUCGC--UCGuCuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26214 0.67 0.685341
Target:  5'- gGuCAGG-CCGC-GCGAGCGGcgacggacGCGCCg -3'
miRNA:   3'- gC-GUCUaGGUGuCGCUCGUCu-------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26106 0.69 0.553134
Target:  5'- uGCGGcgCCGuCGGCGGGUuGGugGCg -3'
miRNA:   3'- gCGUCuaGGU-GUCGCUCGuCUugCGg -5'
12910 5' -54.8 NC_003387.1 + 25902 0.7 0.489469
Target:  5'- aGCAGG-CCACcGCccaggccgccGAGCAGGcCGCCa -3'
miRNA:   3'- gCGUCUaGGUGuCG----------CUCGUCUuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.