miRNA display CGI


Results 81 - 100 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 25535 0.76 0.220256
Target:  5'- cCGCAuGAgCCGCGacGCGGGCAGcGCGCCc -3'
miRNA:   3'- -GCGU-CUaGGUGU--CGCUCGUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 25265 0.66 0.717938
Target:  5'- gCGCug--CCGCGGCG-GCG--GCGCCg -3'
miRNA:   3'- -GCGucuaGGUGUCGCuCGUcuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 25163 0.69 0.531584
Target:  5'- aCGCAGGUUCGgcuCGGCGcGguGGccccgGCGCCg -3'
miRNA:   3'- -GCGUCUAGGU---GUCGCuCguCU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 24935 0.67 0.674357
Target:  5'- cCGC-GA-CCgACGGCGGGCcgccuGAugGCCu -3'
miRNA:   3'- -GCGuCUaGG-UGUCGCUCGu----CUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 24058 0.66 0.717938
Target:  5'- uCGCAGAUUCACcuGGCGcGCAacgGAacugugACGCUg -3'
miRNA:   3'- -GCGUCUAGGUG--UCGCuCGU---CU------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 23931 0.68 0.59693
Target:  5'- uCGCcGGUCCACggccccgacugcGGCGgcuuaGGCGcGGGCGCCg -3'
miRNA:   3'- -GCGuCUAGGUG------------UCGC-----UCGU-CUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 23337 0.67 0.685341
Target:  5'- uGCAGGaugacCCGCugcucacccGCGAGCAaguGAugGCCg -3'
miRNA:   3'- gCGUCUa----GGUGu--------CGCUCGU---CUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 22590 0.72 0.391002
Target:  5'- gGcCAGggUCGCGGCGGGCAuGAuccauucGCGCCa -3'
miRNA:   3'- gC-GUCuaGGUGUCGCUCGU-CU-------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 22571 0.66 0.707143
Target:  5'- gGCAGAUaacCCGCAcGCccGCGGGuuCGCCa -3'
miRNA:   3'- gCGUCUA---GGUGU-CGcuCGUCUu-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 22256 0.68 0.617937
Target:  5'- gGCAGcUCUACgucGGCGguggacuGGCAGAccaggGCGCCa -3'
miRNA:   3'- gCGUCuAGGUG---UCGC-------UCGUCU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 21798 0.72 0.391912
Target:  5'- cCGCGGcggCCAgcuCGGCGAGCG--ACGCCg -3'
miRNA:   3'- -GCGUCua-GGU---GUCGCUCGUcuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 21775 0.67 0.641205
Target:  5'- gCGCGGG-CCGCgcucgccgaGGCGGcCAGGGCGUCg -3'
miRNA:   3'- -GCGUCUaGGUG---------UCGCUcGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 21050 0.67 0.674357
Target:  5'- uCGCGGcAUUCGCGGCGuuGCccgccccugcccGGAugACGCCg -3'
miRNA:   3'- -GCGUC-UAGGUGUCGCu-CG------------UCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 20954 0.71 0.44898
Target:  5'- gGCGGGUCauccggGCAG-GGGCGGGcaACGCCg -3'
miRNA:   3'- gCGUCUAGg-----UGUCgCUCGUCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 20252 0.66 0.707143
Target:  5'- gGCGGcgCCGuccggUGGCGAGCcgacGGugGCCu -3'
miRNA:   3'- gCGUCuaGGU-----GUCGCUCGu---CUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 19969 0.68 0.601346
Target:  5'- uGCAcGUCCuggcucaggcccagcACGGUGucuuGCAGGGCGCCc -3'
miRNA:   3'- gCGUcUAGG---------------UGUCGCu---CGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 19268 0.66 0.728647
Target:  5'- aGCAGGUCgGugaacgugccguUAGCGAccguGCGGGccGCGCCc -3'
miRNA:   3'- gCGUCUAGgU------------GUCGCU----CGUCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 18686 0.72 0.356586
Target:  5'- gGCAGAUCgGCGGCGucgacgucGCGGuGCGCg -3'
miRNA:   3'- gCGUCUAGgUGUCGCu-------CGUCuUGCGg -5'
12910 5' -54.8 NC_003387.1 + 18417 0.68 0.607977
Target:  5'- gCGCGG-UCUgacCGGCGGGCAcGAcggccACGCCg -3'
miRNA:   3'- -GCGUCuAGGu--GUCGCUCGU-CU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 17596 0.72 0.391912
Target:  5'- uGCAGuggCCGCcGCuuGAGCAGGcCGCCg -3'
miRNA:   3'- gCGUCua-GGUGuCG--CUCGUCUuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.