miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 2534 0.68 0.585914
Target:  5'- cCGguGuUCCGCAcGCGgucgccgcGGCAGAuccuCGCCg -3'
miRNA:   3'- -GCguCuAGGUGU-CGC--------UCGUCUu---GCGG- -5'
12910 5' -54.8 NC_003387.1 + 52186 0.7 0.479182
Target:  5'- aGCAGGUCgaGCAGgacgcuguCGAGCAGGcCGCUg -3'
miRNA:   3'- gCGUCUAGg-UGUC--------GCUCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 5093 0.75 0.269291
Target:  5'- gGCGGAuuUCCugcaaugagcgauaACAGCGAGCuGAuCGCCg -3'
miRNA:   3'- gCGUCU--AGG--------------UGUCGCUCGuCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3466 0.68 0.585914
Target:  5'- uCGCuGcgCgGCGGCGAGguGAAauCGCUu -3'
miRNA:   3'- -GCGuCuaGgUGUCGCUCguCUU--GCGG- -5'
12910 5' -54.8 NC_003387.1 + 29738 0.76 0.226166
Target:  5'- gGCAGcuaCGCgGGCGAGCuGGACGCCg -3'
miRNA:   3'- gCGUCuagGUG-UCGCUCGuCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 24058 0.66 0.717938
Target:  5'- uCGCAGAUUCACcuGGCGcGCAacgGAacugugACGCUg -3'
miRNA:   3'- -GCGUCUAGGUG--UCGCuCGU---CU------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 13127 0.72 0.365205
Target:  5'- aGCAca-CCGCGGCGcAGCuugAGGACGCCg -3'
miRNA:   3'- gCGUcuaGGUGUCGC-UCG---UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 46078 0.66 0.707143
Target:  5'- aGCGGGUCgACGaCGAGCccaAGAcggcCGCCg -3'
miRNA:   3'- gCGUCUAGgUGUcGCUCG---UCUu---GCGG- -5'
12910 5' -54.8 NC_003387.1 + 22571 0.66 0.707143
Target:  5'- gGCAGAUaacCCGCAcGCccGCGGGuuCGCCa -3'
miRNA:   3'- gCGUCUA---GGUGU-CGcuCGUCUu-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 24935 0.67 0.674357
Target:  5'- cCGC-GA-CCgACGGCGGGCcgccuGAugGCCu -3'
miRNA:   3'- -GCGuCUaGG-UGUCGCUCGu----CUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 2142 0.67 0.645636
Target:  5'- aCGUGGAguUCCccgaggacucgaugaGCcGCGAGCAGcucGGCGCCu -3'
miRNA:   3'- -GCGUCU--AGG---------------UGuCGCUCGUC---UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 5736 0.68 0.619045
Target:  5'- gGCaAGA-CCGaGGaCGAGCuGAACGCCu -3'
miRNA:   3'- gCG-UCUaGGUgUC-GCUCGuCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 42199 0.68 0.59693
Target:  5'- gGCGGGcgUGC-GCGAGCAGGACGgCg -3'
miRNA:   3'- gCGUCUagGUGuCGCUCGUCUUGCgG- -5'
12910 5' -54.8 NC_003387.1 + 37798 0.69 0.553134
Target:  5'- gCGCAGcacCCGCGGuCGcAGCAGcGCGCg -3'
miRNA:   3'- -GCGUCua-GGUGUC-GC-UCGUCuUGCGg -5'
12910 5' -54.8 NC_003387.1 + 31927 0.69 0.553134
Target:  5'- aGCGGuggCUAC--CGAGCAGAuccGCGCCg -3'
miRNA:   3'- gCGUCua-GGUGucGCUCGUCU---UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 41958 0.69 0.520923
Target:  5'- uGCAGG-CCGcCAGCGAggagcugcgcGCGGAGgcCGCCg -3'
miRNA:   3'- gCGUCUaGGU-GUCGCU----------CGUCUU--GCGG- -5'
12910 5' -54.8 NC_003387.1 + 45511 0.7 0.489469
Target:  5'- uGCaAGggCCGCAGCGAGCuGAcgguguGCugGCCg -3'
miRNA:   3'- gCG-UCuaGGUGUCGCUCGuCU------UG--CGG- -5'
12910 5' -54.8 NC_003387.1 + 20954 0.71 0.44898
Target:  5'- gGCGGGUCauccggGCAG-GGGCGGGcaACGCCg -3'
miRNA:   3'- gCGUCUAGg-----UGUCgCUCGUCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 47921 0.71 0.41986
Target:  5'- gCGCuGGUCgGCGGCaggcauGGGCAcGACGCCg -3'
miRNA:   3'- -GCGuCUAGgUGUCG------CUCGUcUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 28860 0.72 0.373084
Target:  5'- uGCGGGUCggacuggUACcGCGAGCGGcacGGCGCCg -3'
miRNA:   3'- gCGUCUAG-------GUGuCGCUCGUC---UUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.