miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 46948 0.72 0.365205
Target:  5'- uGUcGAUCCGCGGCGAGCGcg--GCCg -3'
miRNA:   3'- gCGuCUAGGUGUCGCUCGUcuugCGG- -5'
12910 5' -54.8 NC_003387.1 + 17596 0.72 0.391912
Target:  5'- uGCAGuggCCGCcGCuuGAGCAGGcCGCCg -3'
miRNA:   3'- gCGUCua-GGUGuCG--CUCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 38941 0.71 0.41986
Target:  5'- cCGCuGAUCUGCGGCGAcGC-GAAuUGCCg -3'
miRNA:   3'- -GCGuCUAGGUGUCGCU-CGuCUU-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 28033 0.7 0.458933
Target:  5'- aGCcGAUCCuCGGCGAGCuG-ACGaCCa -3'
miRNA:   3'- gCGuCUAGGuGUCGCUCGuCuUGC-GG- -5'
12910 5' -54.8 NC_003387.1 + 9733 0.7 0.489469
Target:  5'- uCGCAGGUCUgcGCGGCGguaaGGCaagucgAGGACGCg -3'
miRNA:   3'- -GCGUCUAGG--UGUCGC----UCG------UCUUGCGg -5'
12910 5' -54.8 NC_003387.1 + 46078 0.66 0.707143
Target:  5'- aGCGGGUCgACGaCGAGCccaAGAcggcCGCCg -3'
miRNA:   3'- gCGUCUAGgUGUcGCUCG---UCUu---GCGG- -5'
12910 5' -54.8 NC_003387.1 + 23337 0.67 0.685341
Target:  5'- uGCAGGaugacCCGCugcucacccGCGAGCAaguGAugGCCg -3'
miRNA:   3'- gCGUCUa----GGUGu--------CGCUCGU---CUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 10487 0.67 0.663332
Target:  5'- uCGCcaAGGUUgGCAGCaagaucAGCGGGGCGCUc -3'
miRNA:   3'- -GCG--UCUAGgUGUCGc-----UCGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 49076 0.67 0.641205
Target:  5'- gGCAGGcUCGCGGCGcGCAG-GCGUa -3'
miRNA:   3'- gCGUCUaGGUGUCGCuCGUCuUGCGg -5'
12910 5' -54.8 NC_003387.1 + 45033 0.69 0.520923
Target:  5'- uCGCGGccugagCCGCGGCcuGAGCcuucgcGAGCGCCu -3'
miRNA:   3'- -GCGUCua----GGUGUCG--CUCGu-----CUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 36743 0.7 0.504043
Target:  5'- aCGCGG--CCAgguCGGCGAGCcggugaugccacucgGGGGCGCCg -3'
miRNA:   3'- -GCGUCuaGGU---GUCGCUCG---------------UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 25902 0.7 0.489469
Target:  5'- aGCAGG-CCACcGCccaggccgccGAGCAGGcCGCCa -3'
miRNA:   3'- gCGUCUaGGUGuCG----------CUCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 45915 0.7 0.489469
Target:  5'- gCGCAGGaucUCCGCGGCGucgucGCGGGccaucaGCCg -3'
miRNA:   3'- -GCGUCU---AGGUGUCGCu----CGUCUug----CGG- -5'
12910 5' -54.8 NC_003387.1 + 3971 0.66 0.707143
Target:  5'- gGCGG--UCAgGGuCGGGCAGcGGCGCCg -3'
miRNA:   3'- gCGUCuaGGUgUC-GCUCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29498 0.67 0.674357
Target:  5'- gCGCGGG-CCGCuGCG-GCGGccuccuccuGCGCCc -3'
miRNA:   3'- -GCGUCUaGGUGuCGCuCGUCu--------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 21050 0.67 0.674357
Target:  5'- uCGCGGcAUUCGCGGCGuuGCccgccccugcccGGAugACGCCg -3'
miRNA:   3'- -GCGUC-UAGGUGUCGCu-CG------------UCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 7191 0.7 0.458933
Target:  5'- aCG-AGAUCCGuugccuCGGCGAGCAGcuCGCUu -3'
miRNA:   3'- -GCgUCUAGGU------GUCGCUCGUCuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 45514 0.71 0.44898
Target:  5'- gCGCAGG-CC-CGGCGAGCuu-GCGCa -3'
miRNA:   3'- -GCGUCUaGGuGUCGCUCGucuUGCGg -5'
12910 5' -54.8 NC_003387.1 + 29896 0.7 0.489469
Target:  5'- aGCAGAUugCUACGGgcCGGGCGGGugACGCUa -3'
miRNA:   3'- gCGUCUA--GGUGUC--GCUCGUCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 32928 0.67 0.674357
Target:  5'- gCGCAGu----CGGCGAcGCGGAAcCGCCc -3'
miRNA:   3'- -GCGUCuagguGUCGCU-CGUCUU-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.