miRNA display CGI


Results 81 - 100 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 15168 0.66 0.707143
Target:  5'- aCGCcGAUCCGCGG-GGGCuccaacAGCGUCg -3'
miRNA:   3'- -GCGuCUAGGUGUCgCUCGuc----UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 27484 0.66 0.717938
Target:  5'- gCGguGGUgC-CAGCGcGCgucguacacagAGAACGCCg -3'
miRNA:   3'- -GCguCUAgGuGUCGCuCG-----------UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 34005 0.66 0.732904
Target:  5'- uCGgGGAaCCACAgcucggggucgguuuGCGcGCAGAuCGCCg -3'
miRNA:   3'- -GCgUCUaGGUGU---------------CGCuCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 38704 0.66 0.738202
Target:  5'- uGCAGcgCCAgcgcggcCuGCGGGCcGAacaGCGCCu -3'
miRNA:   3'- gCGUCuaGGU-------GuCGCUCGuCU---UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 23931 0.68 0.59693
Target:  5'- uCGCcGGUCCACggccccgacugcGGCGgcuuaGGCGcGGGCGCCg -3'
miRNA:   3'- -GCGuCUAGGUG------------UCGC-----UCGU-CUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 6234 0.68 0.584814
Target:  5'- uCGCAGAcucaccgacccaaUCgGCcuCGGGCAGGGuCGCCa -3'
miRNA:   3'- -GCGUCU-------------AGgUGucGCUCGUCUU-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 51928 0.68 0.574937
Target:  5'- -cCGGggCCACcGCG-GCAGcGACGCCg -3'
miRNA:   3'- gcGUCuaGGUGuCGCuCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 7191 0.7 0.458933
Target:  5'- aCG-AGAUCCGuugccuCGGCGAGCAGcuCGCUu -3'
miRNA:   3'- -GCgUCUAGGU------GUCGCUCGUCuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 7552 0.7 0.479182
Target:  5'- uGCGGGUgCGCGGCucGguGAuCGCCu -3'
miRNA:   3'- gCGUCUAgGUGUCGcuCguCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 45915 0.7 0.489469
Target:  5'- gCGCAGGaucUCCGCGGCGucgucGCGGGccaucaGCCg -3'
miRNA:   3'- -GCGUCU---AGGUGUCGCu----CGUCUug----CGG- -5'
12910 5' -54.8 NC_003387.1 + 29896 0.7 0.489469
Target:  5'- aGCAGAUugCUACGGgcCGGGCGGGugACGCUa -3'
miRNA:   3'- gCGUCUA--GGUGUC--GCUCGUCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 25902 0.7 0.489469
Target:  5'- aGCAGG-CCACcGCccaggccgccGAGCAGGcCGCCa -3'
miRNA:   3'- gCGUCUaGGUGuCG----------CUCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 36743 0.7 0.504043
Target:  5'- aCGCGG--CCAgguCGGCGAGCcggugaugccacucgGGGGCGCCg -3'
miRNA:   3'- -GCGUCuaGGU---GUCGCUCG---------------UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 45033 0.69 0.520923
Target:  5'- uCGCGGccugagCCGCGGCcuGAGCcuucgcGAGCGCCu -3'
miRNA:   3'- -GCGUCua----GGUGUCG--CUCGu-----CUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 44475 0.69 0.542323
Target:  5'- aGCGucagCCGCGGCGAGCuu--CGCCu -3'
miRNA:   3'- gCGUcua-GGUGUCGCUCGucuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26515 0.69 0.542323
Target:  5'- uCGC-GAUCCACGGCGugAGCuGcuCGUCg -3'
miRNA:   3'- -GCGuCUAGGUGUCGC--UCGuCuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26106 0.69 0.553134
Target:  5'- uGCGGcgCCGuCGGCGGGUuGGugGCg -3'
miRNA:   3'- gCGUCuaGGU-GUCGCUCGuCUugCGg -5'
12910 5' -54.8 NC_003387.1 + 50842 0.69 0.564008
Target:  5'- cCGCGGGUCU--GGcCGGGCA--GCGCCa -3'
miRNA:   3'- -GCGUCUAGGugUC-GCUCGUcuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 44517 0.68 0.574937
Target:  5'- gCGCAGcgCCucgugcgcguCGGCGGGCAGcauCGCg -3'
miRNA:   3'- -GCGUCuaGGu---------GUCGCUCGUCuu-GCGg -5'
12910 5' -54.8 NC_003387.1 + 3132 0.68 0.574937
Target:  5'- gGCucGA-CCGaGGCGGGCGgGAACGCCu -3'
miRNA:   3'- gCGu-CUaGGUgUCGCUCGU-CUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.