miRNA display CGI


Results 101 - 120 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 25902 0.7 0.489469
Target:  5'- aGCAGG-CCACcGCccaggccgccGAGCAGGcCGCCa -3'
miRNA:   3'- gCGUCUaGGUGuCG----------CUCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 36743 0.7 0.504043
Target:  5'- aCGCGG--CCAgguCGGCGAGCcggugaugccacucgGGGGCGCCg -3'
miRNA:   3'- -GCGUCuaGGU---GUCGCUCG---------------UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 45033 0.69 0.520923
Target:  5'- uCGCGGccugagCCGCGGCcuGAGCcuucgcGAGCGCCu -3'
miRNA:   3'- -GCGUCua----GGUGUCG--CUCGu-----CUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 44475 0.69 0.542323
Target:  5'- aGCGucagCCGCGGCGAGCuu--CGCCu -3'
miRNA:   3'- gCGUcua-GGUGUCGCUCGucuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26515 0.69 0.542323
Target:  5'- uCGC-GAUCCACGGCGugAGCuGcuCGUCg -3'
miRNA:   3'- -GCGuCUAGGUGUCGC--UCGuCuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 50842 0.69 0.564008
Target:  5'- cCGCGGGUCU--GGcCGGGCA--GCGCCa -3'
miRNA:   3'- -GCGUCUAGGugUC-GCUCGUcuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 18417 0.68 0.607977
Target:  5'- gCGCGG-UCUgacCGGCGGGCAcGAcggccACGCCg -3'
miRNA:   3'- -GCGUCuAGGu--GUCGCUCGU-CU-----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 32928 0.67 0.674357
Target:  5'- gCGCAGu----CGGCGAcGCGGAAcCGCCc -3'
miRNA:   3'- -GCGUCuagguGUCGCU-CGUCUU-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 48860 0.75 0.244707
Target:  5'- cCGCGgcGAUCaGCGGCGAGCuGGcuGCGCCg -3'
miRNA:   3'- -GCGU--CUAGgUGUCGCUCGuCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 33344 0.77 0.203312
Target:  5'- uCGgGGAUCgGCGGCaggccGGGCAGGACGUCg -3'
miRNA:   3'- -GCgUCUAGgUGUCG-----CUCGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 25535 0.76 0.220256
Target:  5'- cCGCAuGAgCCGCGacGCGGGCAGcGCGCCc -3'
miRNA:   3'- -GCGU-CUaGGUGU--CGCUCGUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 49281 0.76 0.23221
Target:  5'- gGCAGAUCCGuuGCGGGCucAGcAACGUCg -3'
miRNA:   3'- gCGUCUAGGUguCGCUCG--UC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 34095 0.75 0.23839
Target:  5'- uGCGGGUCgCGCAGCGc-CAGGGCGCg -3'
miRNA:   3'- gCGUCUAG-GUGUCGCucGUCUUGCGg -5'
12910 5' -54.8 NC_003387.1 + 27525 0.75 0.264492
Target:  5'- gGCAGGUCgCACAuCGGGCAGucaGCCa -3'
miRNA:   3'- gCGUCUAG-GUGUcGCUCGUCuugCGG- -5'
12910 5' -54.8 NC_003387.1 + 19969 0.68 0.601346
Target:  5'- uGCAcGUCCuggcucaggcccagcACGGUGucuuGCAGGGCGCCc -3'
miRNA:   3'- gCGUcUAGG---------------UGUCGCu---CGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 41294 0.68 0.630124
Target:  5'- cCGCGGAguugCCgugcuuauucggGCAGCG-GUAGugcACGCCg -3'
miRNA:   3'- -GCGUCUa---GG------------UGUCGCuCGUCu--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 35332 0.68 0.630124
Target:  5'- cCGCGGcgCCAguugucguCGGCGuacuuGCGG-GCGCCg -3'
miRNA:   3'- -GCGUCuaGGU--------GUCGCu----CGUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 2097 0.68 0.619045
Target:  5'- gGCGGccGUCgGCGGCaccGAGCAGGgccaGCGUCa -3'
miRNA:   3'- gCGUC--UAGgUGUCG---CUCGUCU----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 32849 0.68 0.619045
Target:  5'- gGCGGua-CGCGGCGGGUGGuuGCGCa -3'
miRNA:   3'- gCGUCuagGUGUCGCUCGUCu-UGCGg -5'
12910 5' -54.8 NC_003387.1 + 577 0.68 0.615723
Target:  5'- cCGCGGucgCCACGcgggcgcgcaucgcGaCGAGCAGcucGCGCCg -3'
miRNA:   3'- -GCGUCua-GGUGU--------------C-GCUCGUCu--UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.