miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 38704 0.66 0.738202
Target:  5'- uGCAGcgCCAgcgcggcCuGCGGGCcGAacaGCGCCu -3'
miRNA:   3'- gCGUCuaGGU-------GuCGCUCGuCU---UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 1295 0.66 0.739258
Target:  5'- aGCAGGau--CAGCGGGUuaGGCGCCg -3'
miRNA:   3'- gCGUCUagguGUCGCUCGucUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 36955 0.66 0.739258
Target:  5'- aCGCGGugcCCGuCGGCGAGCAcAAuCGUCu -3'
miRNA:   3'- -GCGUCua-GGU-GUCGCUCGUcUU-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 34396 0.66 0.739258
Target:  5'- gCGaCGGGUCgGCcGCGGGCAGcGCGg- -3'
miRNA:   3'- -GC-GUCUAGgUGuCGCUCGUCuUGCgg -5'
12910 5' -54.8 NC_003387.1 + 52082 0.66 0.74976
Target:  5'- uCGUcgAGggCCgACAGguCGGGCAGGuGCGCCa -3'
miRNA:   3'- -GCG--UCuaGG-UGUC--GCUCGUCU-UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3971 0.66 0.707143
Target:  5'- gGCGG--UCAgGGuCGGGCAGcGGCGCCg -3'
miRNA:   3'- gCGUCuaGGUgUC-GCUCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 20252 0.66 0.707143
Target:  5'- gGCGGcgCCGuccggUGGCGAGCcgacGGugGCCu -3'
miRNA:   3'- gCGUCuaGGU-----GUCGCUCGu---CUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 21050 0.67 0.674357
Target:  5'- uCGCGGcAUUCGCGGCGuuGCccgccccugcccGGAugACGCCg -3'
miRNA:   3'- -GCGUC-UAGGUGUCGCu-CG------------UCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 46765 0.67 0.685341
Target:  5'- aGCGGcacgaGguGCG-GCAGGGCGCCg -3'
miRNA:   3'- gCGUCuagg-UguCGCuCGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26214 0.67 0.685341
Target:  5'- gGuCAGG-CCGC-GCGAGCGGcgacggacGCGCCg -3'
miRNA:   3'- gC-GUCUaGGUGuCGCUCGUCu-------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3024 0.67 0.685341
Target:  5'- cCGCuGAUCaCGCGcuGCGGGUu-GGCGCCg -3'
miRNA:   3'- -GCGuCUAG-GUGU--CGCUCGucUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 36528 0.66 0.696273
Target:  5'- gGCuGcgCCugGGCGAGCuGcuCGCg -3'
miRNA:   3'- gCGuCuaGGugUCGCUCGuCuuGCGg -5'
12910 5' -54.8 NC_003387.1 + 51619 0.66 0.696273
Target:  5'- aGCGGua--GCGGCGGGCgcaggggcaaGGGugGCCg -3'
miRNA:   3'- gCGUCuaggUGUCGCUCG----------UCUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 10925 0.66 0.696273
Target:  5'- gGCAGA-CCGCggucGGCGAGCuGGcgaagcuccaACGUCa -3'
miRNA:   3'- gCGUCUaGGUG----UCGCUCGuCU----------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 5159 0.66 0.696273
Target:  5'- uGCAGGaaaUCCGCcguuAGUGGGUu--GCGCCa -3'
miRNA:   3'- gCGUCU---AGGUG----UCGCUCGucuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3283 0.66 0.696273
Target:  5'- aCGC---UUCGCGGCGAGCuu-GCGCUg -3'
miRNA:   3'- -GCGucuAGGUGUCGCUCGucuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3610 0.66 0.706059
Target:  5'- aGCAGccgCCugggGCGGCG-GCGGGggcacugGCGCCg -3'
miRNA:   3'- gCGUCua-GG----UGUCGCuCGUCU-------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 32005 0.66 0.706059
Target:  5'- gCGCGGAUCUGCucGGUgagccaccgcucgGAGCAGGggauACGUCg -3'
miRNA:   3'- -GCGUCUAGGUG--UCG-------------CUCGUCU----UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 8131 0.66 0.706059
Target:  5'- gCGCGGG-CCGcCAGCucgucGAGCAGAuaggcucGCGCg -3'
miRNA:   3'- -GCGUCUaGGU-GUCG-----CUCGUCU-------UGCGg -5'
12910 5' -54.8 NC_003387.1 + 34692 0.66 0.707143
Target:  5'- gCGCAGGUagGCGGCcaugccGguGAAUGCCg -3'
miRNA:   3'- -GCGUCUAggUGUCGcu----CguCUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.