miRNA display CGI


Results 61 - 80 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 3610 0.66 0.706059
Target:  5'- aGCAGccgCCugggGCGGCG-GCGGGggcacugGCGCCg -3'
miRNA:   3'- gCGUCua-GG----UGUCGCuCGUCU-------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 3283 0.66 0.696273
Target:  5'- aCGC---UUCGCGGCGAGCuu-GCGCUg -3'
miRNA:   3'- -GCGucuAGGUGUCGCUCGucuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 225 0.67 0.674357
Target:  5'- aGCAGGcCCAgcuCGGCGGcGCGGAuCGCg -3'
miRNA:   3'- gCGUCUaGGU---GUCGCU-CGUCUuGCGg -5'
12910 5' -54.8 NC_003387.1 + 37421 0.67 0.663332
Target:  5'- cCGCAGAUagcgcagcCCGCGGCGGGggcucguccaCGGcACGUCg -3'
miRNA:   3'- -GCGUCUA--------GGUGUCGCUC----------GUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 10733 0.67 0.652278
Target:  5'- uCGCAG--CCGCGuCGAgGCcGAACGCCg -3'
miRNA:   3'- -GCGUCuaGGUGUcGCU-CGuCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 52045 0.67 0.652278
Target:  5'- uGCGGucggCCACcGCG-GCAGcGACGUCg -3'
miRNA:   3'- gCGUCua--GGUGuCGCuCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 1045 0.67 0.641205
Target:  5'- uGCGGAaagucUCUGCGGcCGuGCGGGuccgguGCGCCg -3'
miRNA:   3'- gCGUCU-----AGGUGUC-GCuCGUCU------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 37992 0.67 0.641205
Target:  5'- gGCGGugccgagCCAC-GCGGGCAGcggguCGCCc -3'
miRNA:   3'- gCGUCua-----GGUGuCGCUCGUCuu---GCGG- -5'
12910 5' -54.8 NC_003387.1 + 21775 0.67 0.641205
Target:  5'- gCGCGGG-CCGCgcucgccgaGGCGGcCAGGGCGUCg -3'
miRNA:   3'- -GCGUCUaGGUG---------UCGCUcGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 42232 0.67 0.641205
Target:  5'- aGCuccucGAUCgACAGCGGGCcac-CGCCg -3'
miRNA:   3'- gCGu----CUAGgUGUCGCUCGucuuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 32928 0.67 0.674357
Target:  5'- gCGCAGu----CGGCGAcGCGGAAcCGCCc -3'
miRNA:   3'- -GCGUCuagguGUCGCU-CGUCUU-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 29498 0.67 0.674357
Target:  5'- gCGCGGG-CCGCuGCG-GCGGccuccuccuGCGCCc -3'
miRNA:   3'- -GCGUCUaGGUGuCGCuCGUCu--------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 5159 0.66 0.696273
Target:  5'- uGCAGGaaaUCCGCcguuAGUGGGUu--GCGCCa -3'
miRNA:   3'- gCGUCU---AGGUG----UCGCUCGucuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 10925 0.66 0.696273
Target:  5'- gGCAGA-CCGCggucGGCGAGCuGGcgaagcuccaACGUCa -3'
miRNA:   3'- gCGUCUaGGUG----UCGCUCGuCU----------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 51619 0.66 0.696273
Target:  5'- aGCGGua--GCGGCGGGCgcaggggcaaGGGugGCCg -3'
miRNA:   3'- gCGUCuaggUGUCGCUCG----------UCUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 36528 0.66 0.696273
Target:  5'- gGCuGcgCCugGGCGAGCuGcuCGCg -3'
miRNA:   3'- gCGuCuaGGugUCGCUCGuCuuGCGg -5'
12910 5' -54.8 NC_003387.1 + 3024 0.67 0.685341
Target:  5'- cCGCuGAUCaCGCGcuGCGGGUu-GGCGCCg -3'
miRNA:   3'- -GCGuCUAG-GUGU--CGCUCGucUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 26214 0.67 0.685341
Target:  5'- gGuCAGG-CCGC-GCGAGCGGcgacggacGCGCCg -3'
miRNA:   3'- gC-GUCUaGGUGuCGCUCGUCu-------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 46765 0.67 0.685341
Target:  5'- aGCGGcacgaGguGCG-GCAGGGCGCCg -3'
miRNA:   3'- gCGUCuagg-UguCGCuCGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 21050 0.67 0.674357
Target:  5'- uCGCGGcAUUCGCGGCGuuGCccgccccugcccGGAugACGCCg -3'
miRNA:   3'- -GCGUC-UAGGUGUCGCu-CG------------UCU--UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.