miRNA display CGI


Results 81 - 100 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12910 5' -54.8 NC_003387.1 + 46765 0.67 0.685341
Target:  5'- aGCGGcacgaGguGCG-GCAGGGCGCCg -3'
miRNA:   3'- gCGUCuagg-UguCGCuCGUCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 21050 0.67 0.674357
Target:  5'- uCGCGGcAUUCGCGGCGuuGCccgccccugcccGGAugACGCCg -3'
miRNA:   3'- -GCGUC-UAGGUGUCGCu-CG------------UCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29498 0.67 0.674357
Target:  5'- gCGCGGG-CCGCuGCG-GCGGccuccuccuGCGCCc -3'
miRNA:   3'- -GCGUCUaGGUGuCGCuCGUCu--------UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 16570 0.71 0.41041
Target:  5'- uGCAGGUgCGCAaCG-GCGGcAACGCCg -3'
miRNA:   3'- gCGUCUAgGUGUcGCuCGUC-UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 47921 0.71 0.41986
Target:  5'- gCGCuGGUCgGCGGCaggcauGGGCAcGACGCCg -3'
miRNA:   3'- -GCGuCUAGgUGUCG------CUCGUcUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 38941 0.71 0.41986
Target:  5'- cCGCuGAUCUGCGGCGAcGC-GAAuUGCCg -3'
miRNA:   3'- -GCGuCUAGGUGUCGCU-CGuCUU-GCGG- -5'
12910 5' -54.8 NC_003387.1 + 36001 0.71 0.42944
Target:  5'- gGCAcGAUCgACGGCGAggucGUGGuGCGCCg -3'
miRNA:   3'- gCGU-CUAGgUGUCGCU----CGUCuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 20954 0.71 0.44898
Target:  5'- gGCGGGUCauccggGCAG-GGGCGGGcaACGCCg -3'
miRNA:   3'- gCGUCUAGg-----UGUCgCUCGUCU--UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 28033 0.7 0.458933
Target:  5'- aGCcGAUCCuCGGCGAGCuG-ACGaCCa -3'
miRNA:   3'- gCGuCUAGGuGUCGCUCGuCuUGC-GG- -5'
12910 5' -54.8 NC_003387.1 + 3831 0.7 0.458933
Target:  5'- uCGCAGGcgauuUCCGCGGUGGcccagcaaacacGCAGGGCGgCa -3'
miRNA:   3'- -GCGUCU-----AGGUGUCGCU------------CGUCUUGCgG- -5'
12910 5' -54.8 NC_003387.1 + 21798 0.72 0.391912
Target:  5'- cCGCGGcggCCAgcuCGGCGAGCG--ACGCCg -3'
miRNA:   3'- -GCGUCua-GGU---GUCGCUCGUcuUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 17596 0.72 0.391912
Target:  5'- uGCAGuggCCGCcGCuuGAGCAGGcCGCCg -3'
miRNA:   3'- gCGUCua-GGUGuCG--CUCGUCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 28860 0.72 0.373084
Target:  5'- uGCGGGUCggacuggUACcGCGAGCGGcacGGCGCCg -3'
miRNA:   3'- gCGUCUAG-------GUGuCGCUCGUC---UUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 357 0.72 0.365205
Target:  5'- gCGCGgucGAUCUGC-GCGAGCGGuuccGCGCCc -3'
miRNA:   3'- -GCGU---CUAGGUGuCGCUCGUCu---UGCGG- -5'
12910 5' -54.8 NC_003387.1 + 46948 0.72 0.365205
Target:  5'- uGUcGAUCCGCGGCGAGCGcg--GCCg -3'
miRNA:   3'- gCGuCUAGGUGUCGCUCGUcuugCGG- -5'
12910 5' -54.8 NC_003387.1 + 13127 0.72 0.365205
Target:  5'- aGCAca-CCGCGGCGcAGCuugAGGACGCCg -3'
miRNA:   3'- gCGUcuaGGUGUCGC-UCG---UCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 33196 0.74 0.281239
Target:  5'- uGCGGAUCgCGCAGCGcaAGCGcgaggcccgcucggcGAugGCCg -3'
miRNA:   3'- gCGUCUAG-GUGUCGC--UCGU---------------CUugCGG- -5'
12910 5' -54.8 NC_003387.1 + 5093 0.75 0.269291
Target:  5'- gGCGGAuuUCCugcaaugagcgauaACAGCGAGCuGAuCGCCg -3'
miRNA:   3'- gCGUCU--AGG--------------UGUCGCUCGuCUuGCGG- -5'
12910 5' -54.8 NC_003387.1 + 29738 0.76 0.226166
Target:  5'- gGCAGcuaCGCgGGCGAGCuGGACGCCg -3'
miRNA:   3'- gCGUCuagGUG-UCGCUCGuCUUGCGG- -5'
12910 5' -54.8 NC_003387.1 + 39214 0.66 0.74976
Target:  5'- cCGCGG-UCgGgCAGUggGAGCGGGuaccgGCGCCg -3'
miRNA:   3'- -GCGUCuAGgU-GUCG--CUCGUCU-----UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.