miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12913 3' -63.5 NC_003387.1 + 27260 0.66 0.329291
Target:  5'- cGGCCCGgcaUGCCUGGUCGCgcgaggagaaCGCc -3'
miRNA:   3'- uCCGGGC---GCGGGCCGGCGaguaa-----GCG- -5'
12913 3' -63.5 NC_003387.1 + 44960 0.66 0.326254
Target:  5'- cAGGCCgCG-GCUCaGGCCGCga--UCGCc -3'
miRNA:   3'- -UCCGG-GCgCGGG-CCGGCGaguaAGCG- -5'
12913 3' -63.5 NC_003387.1 + 32451 0.66 0.326254
Target:  5'- cGGCCCGCaguGCCUaGcGCCauGCgggCGUUUGCg -3'
miRNA:   3'- uCCGGGCG---CGGG-C-CGG--CGa--GUAAGCG- -5'
12913 3' -63.5 NC_003387.1 + 34140 0.66 0.326254
Target:  5'- -cGCCUGCGCuCCuGGgCGCUUAggcCGCc -3'
miRNA:   3'- ucCGGGCGCG-GG-CCgGCGAGUaa-GCG- -5'
12913 3' -63.5 NC_003387.1 + 45030 0.66 0.326254
Target:  5'- cGGCCUGaGCCgCGGCCugaGC-C-UUCGCg -3'
miRNA:   3'- uCCGGGCgCGG-GCCGG---CGaGuAAGCG- -5'
12913 3' -63.5 NC_003387.1 + 34298 0.66 0.324743
Target:  5'- aGGGCCUGCagcaugcucucggGCCgccgcggUGGCaCGCaggCGUUCGCg -3'
miRNA:   3'- -UCCGGGCG-------------CGG-------GCCG-GCGa--GUAAGCG- -5'
12913 3' -63.5 NC_003387.1 + 545 0.66 0.318753
Target:  5'- -uGCCCGCGaUCUGGCUGCcCugaCGCg -3'
miRNA:   3'- ucCGGGCGC-GGGCCGGCGaGuaaGCG- -5'
12913 3' -63.5 NC_003387.1 + 44521 0.66 0.318753
Target:  5'- -uGUUCGUGCCgGGCCGCcCGgcgcCGCa -3'
miRNA:   3'- ucCGGGCGCGGgCCGGCGaGUaa--GCG- -5'
12913 3' -63.5 NC_003387.1 + 22241 0.66 0.318753
Target:  5'- -cGCCCcCGCCUgGGCCGCUgAgcgUGCc -3'
miRNA:   3'- ucCGGGcGCGGG-CCGGCGAgUaa-GCG- -5'
12913 3' -63.5 NC_003387.1 + 35293 0.66 0.311382
Target:  5'- cGGCCguaGUGCUCGGCCag-CAUgCGCa -3'
miRNA:   3'- uCCGGg--CGCGGGCCGGcgaGUAaGCG- -5'
12913 3' -63.5 NC_003387.1 + 7826 0.66 0.311382
Target:  5'- cGGCCgagGuCGCCCGGCgCGCaggCGgaaUCGCc -3'
miRNA:   3'- uCCGGg--C-GCGGGCCG-GCGa--GUa--AGCG- -5'
12913 3' -63.5 NC_003387.1 + 37860 0.66 0.311382
Target:  5'- cGGGUgCUGCGCCCaGGCgCGCUUgagcaCGCc -3'
miRNA:   3'- -UCCG-GGCGCGGG-CCG-GCGAGuaa--GCG- -5'
12913 3' -63.5 NC_003387.1 + 32541 0.66 0.307022
Target:  5'- gAGGCgcagcagcgcaucaaCCGCGCCCucgacGCC-CUCggGUUCGCg -3'
miRNA:   3'- -UCCG---------------GGCGCGGGc----CGGcGAG--UAAGCG- -5'
12913 3' -63.5 NC_003387.1 + 33065 0.66 0.304141
Target:  5'- cGGGUgCGCGCCaagcGCCGCgagCGUaacCGCg -3'
miRNA:   3'- -UCCGgGCGCGGgc--CGGCGa--GUAa--GCG- -5'
12913 3' -63.5 NC_003387.1 + 19067 0.66 0.304141
Target:  5'- gAGGCCCaCGCC--GCCaGCUCGUcgaugcUCGCc -3'
miRNA:   3'- -UCCGGGcGCGGgcCGG-CGAGUA------AGCG- -5'
12913 3' -63.5 NC_003387.1 + 45853 0.66 0.304141
Target:  5'- cGGCCUGCGCagCGGCgGg-CAggCGCc -3'
miRNA:   3'- uCCGGGCGCGg-GCCGgCgaGUaaGCG- -5'
12913 3' -63.5 NC_003387.1 + 21495 0.66 0.304141
Target:  5'- -aGCugCUGCGCCgGGCCGCcgggggCGUUgGCg -3'
miRNA:   3'- ucCG--GGCGCGGgCCGGCGa-----GUAAgCG- -5'
12913 3' -63.5 NC_003387.1 + 48185 0.66 0.302708
Target:  5'- cAGGCCCGCaagguGCCCgcaccggcggcggcGGCCGaggugacccgcacgaUCGUgUCGCg -3'
miRNA:   3'- -UCCGGGCG-----CGGG--------------CCGGCg--------------AGUA-AGCG- -5'
12913 3' -63.5 NC_003387.1 + 2016 0.66 0.29703
Target:  5'- uGGCCCugcucgGUGCCgccgaCGGCCGC-CG-UCGCc -3'
miRNA:   3'- uCCGGG------CGCGG-----GCCGGCGaGUaAGCG- -5'
12913 3' -63.5 NC_003387.1 + 18540 0.66 0.29703
Target:  5'- uGGCuuGUGCgCGaGUCGUUCGagCGCa -3'
miRNA:   3'- uCCGggCGCGgGC-CGGCGAGUaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.