miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12913 3' -63.5 NC_003387.1 + 23920 0.66 0.29703
Target:  5'- cGGCCC-CGaCUgCGGCgGCUUAggCGCg -3'
miRNA:   3'- uCCGGGcGC-GG-GCCGgCGAGUaaGCG- -5'
12913 3' -63.5 NC_003387.1 + 24854 0.66 0.296326
Target:  5'- gGGGCUCggucgggGCGCUCGGCgUGCUCGgcUUgGCc -3'
miRNA:   3'- -UCCGGG-------CGCGGGCCG-GCGAGU--AAgCG- -5'
12913 3' -63.5 NC_003387.1 + 44687 0.66 0.290049
Target:  5'- -cGCUCGCGCCaCGGCCcgacgGCg---UCGCu -3'
miRNA:   3'- ucCGGGCGCGG-GCCGG-----CGaguaAGCG- -5'
12913 3' -63.5 NC_003387.1 + 30145 0.66 0.290049
Target:  5'- -uGCUCGC-CCCGGCgGCcgUCAgggCGCg -3'
miRNA:   3'- ucCGGGCGcGGGCCGgCG--AGUaa-GCG- -5'
12913 3' -63.5 NC_003387.1 + 49825 0.66 0.290049
Target:  5'- cGGCCugcCGCGCCCGGCgaGCgaGUUCcuGCc -3'
miRNA:   3'- uCCGG---GCGCGGGCCGg-CGagUAAG--CG- -5'
12913 3' -63.5 NC_003387.1 + 47033 0.66 0.290049
Target:  5'- cGGCCCG-GCCgGGCaugaggcguggCGCUCGUUUu- -3'
miRNA:   3'- uCCGGGCgCGGgCCG-----------GCGAGUAAGcg -5'
12913 3' -63.5 NC_003387.1 + 21292 0.66 0.290049
Target:  5'- -cGCCCuGCGCCCGcacGCUGUUCca-CGCg -3'
miRNA:   3'- ucCGGG-CGCGGGC---CGGCGAGuaaGCG- -5'
12913 3' -63.5 NC_003387.1 + 50845 0.66 0.290049
Target:  5'- cGGCCgCGgGUCUGGCCGggCAg-CGCc -3'
miRNA:   3'- uCCGG-GCgCGGGCCGGCgaGUaaGCG- -5'
12913 3' -63.5 NC_003387.1 + 13244 0.66 0.290049
Target:  5'- cGGCCagguCGCGCUCGGCC-UUCugcaCGCg -3'
miRNA:   3'- uCCGG----GCGCGGGCCGGcGAGuaa-GCG- -5'
12913 3' -63.5 NC_003387.1 + 29398 0.66 0.290049
Target:  5'- cGGCUuucagCGCgGCCUGG-CGCUCGUgccCGCg -3'
miRNA:   3'- uCCGG-----GCG-CGGGCCgGCGAGUAa--GCG- -5'
12913 3' -63.5 NC_003387.1 + 13171 0.67 0.283198
Target:  5'- aAGGCCgagCGCGaCCUGGCCGacgcgaUCGagaagCGCg -3'
miRNA:   3'- -UCCGG---GCGC-GGGCCGGCg-----AGUaa---GCG- -5'
12913 3' -63.5 NC_003387.1 + 19435 0.67 0.281843
Target:  5'- cAGGCguggcaaccagagCC-CGCCCGGCCagguucucgccgcGCUCG-UCGCu -3'
miRNA:   3'- -UCCG-------------GGcGCGGGCCGG-------------CGAGUaAGCG- -5'
12913 3' -63.5 NC_003387.1 + 52623 0.67 0.27982
Target:  5'- cGGUCaCGaaagugaCGCCCGGCCGC-CAgcucggcggcuugUCGCu -3'
miRNA:   3'- uCCGG-GC-------GCGGGCCGGCGaGUa------------AGCG- -5'
12913 3' -63.5 NC_003387.1 + 381 0.67 0.276475
Target:  5'- cGGGCUCGgGCuccaCCGGCuCGgUCGUgaUCGUg -3'
miRNA:   3'- -UCCGGGCgCG----GGCCG-GCgAGUA--AGCG- -5'
12913 3' -63.5 NC_003387.1 + 49656 0.67 0.276475
Target:  5'- cAGGCCaC-CGCCCGGCaGCggg--CGCa -3'
miRNA:   3'- -UCCGG-GcGCGGGCCGgCGaguaaGCG- -5'
12913 3' -63.5 NC_003387.1 + 29549 0.67 0.276475
Target:  5'- cGGgCCGUGCCCugcucgcugGcGCCGUUCucgaUCGCg -3'
miRNA:   3'- uCCgGGCGCGGG---------C-CGGCGAGua--AGCG- -5'
12913 3' -63.5 NC_003387.1 + 48716 0.67 0.26988
Target:  5'- uGGGCCUGgcugaucgcCGCCaCGGCCGcCUCAauccUCGg -3'
miRNA:   3'- -UCCGGGC---------GCGG-GCCGGC-GAGUa---AGCg -5'
12913 3' -63.5 NC_003387.1 + 7903 0.67 0.26988
Target:  5'- -cGCCUGCGCgccgggcaccUCGGCCGC-CAggcgUUGCa -3'
miRNA:   3'- ucCGGGCGCG----------GGCCGGCGaGUa---AGCG- -5'
12913 3' -63.5 NC_003387.1 + 38684 0.67 0.26988
Target:  5'- cGGGCCgaacaGCGCcucgaucaCCGGCaCGCUCAgggugUCGa -3'
miRNA:   3'- -UCCGGg----CGCG--------GGCCG-GCGAGUa----AGCg -5'
12913 3' -63.5 NC_003387.1 + 1794 0.67 0.26988
Target:  5'- cGGGaUgCGcCGCCCGGCCcGCUCAgcgauccagUCGa -3'
miRNA:   3'- -UCC-GgGC-GCGGGCCGG-CGAGUa--------AGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.