miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12916 3' -57.6 NC_003387.1 + 50243 0.66 0.577998
Target:  5'- cGAGGCGccGUaCGUCAgCGCCgGGCgGUGCa -3'
miRNA:   3'- -CUCCGC--CA-GUAGUgGUGG-CUG-CACGa -5'
12916 3' -57.6 NC_003387.1 + 49174 0.66 0.567239
Target:  5'- cAGGCGGUCGcgCaggcggcgGCCGUCGACGuUGCUg -3'
miRNA:   3'- cUCCGCCAGUa-G--------UGGUGGCUGC-ACGA- -5'
12916 3' -57.6 NC_003387.1 + 46591 0.66 0.545882
Target:  5'- cGGGCagGGUCGcCAgCACCGGCagGUGCg -3'
miRNA:   3'- cUCCG--CCAGUaGUgGUGGCUG--CACGa -5'
12916 3' -57.6 NC_003387.1 + 50418 0.66 0.545882
Target:  5'- cGGGCGGcagaUCGUCGCC-UCGGCGUacGCc -3'
miRNA:   3'- cUCCGCC----AGUAGUGGuGGCUGCA--CGa -5'
12916 3' -57.6 NC_003387.1 + 7847 0.67 0.535299
Target:  5'- cAGGCGGa-AUCGCCGacgcccCCGACG-GCUa -3'
miRNA:   3'- cUCCGCCagUAGUGGU------GGCUGCaCGA- -5'
12916 3' -57.6 NC_003387.1 + 24881 0.67 0.535299
Target:  5'- cGGGCGGUgGcugcgcccUguCCACCGACG-GCa -3'
miRNA:   3'- cUCCGCCAgU--------AguGGUGGCUGCaCGa -5'
12916 3' -57.6 NC_003387.1 + 29707 0.67 0.524789
Target:  5'- cGAGGCGcUCGgcggCGCCcagGCCGACGacgGCa -3'
miRNA:   3'- -CUCCGCcAGUa---GUGG---UGGCUGCa--CGa -5'
12916 3' -57.6 NC_003387.1 + 42425 0.67 0.504014
Target:  5'- cAGGCccgcaaGGUCGUCACCgagcgguucaagGCCGA-GUGCg -3'
miRNA:   3'- cUCCG------CCAGUAGUGG------------UGGCUgCACGa -5'
12916 3' -57.6 NC_003387.1 + 643 0.67 0.504014
Target:  5'- cAGGCGGUCGaguaggGCCuGCaCGAUGUGCUc -3'
miRNA:   3'- cUCCGCCAGUag----UGG-UG-GCUGCACGA- -5'
12916 3' -57.6 NC_003387.1 + 625 0.67 0.504014
Target:  5'- aGGGCGaGggcagCGUCGCCGCCG-CG-GCa -3'
miRNA:   3'- cUCCGC-Ca----GUAGUGGUGGCuGCaCGa -5'
12916 3' -57.6 NC_003387.1 + 33482 0.67 0.504014
Target:  5'- cGAGGCGGUCggCGCCcgcgAUCG-CGUGa- -3'
miRNA:   3'- -CUCCGCCAGuaGUGG----UGGCuGCACga -5'
12916 3' -57.6 NC_003387.1 + 18043 0.68 0.473547
Target:  5'- cGAGGCGG-CGUUucagaacuUCACCGGCGUuGCc -3'
miRNA:   3'- -CUCCGCCaGUAGu-------GGUGGCUGCA-CGa -5'
12916 3' -57.6 NC_003387.1 + 51191 0.68 0.473547
Target:  5'- -uGGCGaUCcUCGgCACCGAgGUGCUg -3'
miRNA:   3'- cuCCGCcAGuAGUgGUGGCUgCACGA- -5'
12916 3' -57.6 NC_003387.1 + 28562 0.68 0.473547
Target:  5'- cGAGGCGGcgAUCGCCGUCGACGacGCc -3'
miRNA:   3'- -CUCCGCCagUAGUGGUGGCUGCa-CGa -5'
12916 3' -57.6 NC_003387.1 + 1486 0.68 0.444033
Target:  5'- aGGGCGucgacGUCGagCACCaggccgcgGCCGACGUGCa -3'
miRNA:   3'- cUCCGC-----CAGUa-GUGG--------UGGCUGCACGa -5'
12916 3' -57.6 NC_003387.1 + 1419 0.69 0.406349
Target:  5'- cGAGGCGc----CGCCGCCGACGaGCUg -3'
miRNA:   3'- -CUCCGCcaguaGUGGUGGCUGCaCGA- -5'
12916 3' -57.6 NC_003387.1 + 21530 0.69 0.388275
Target:  5'- cAGGCGcG-CGUCGCguUCGACGUGCc -3'
miRNA:   3'- cUCCGC-CaGUAGUGguGGCUGCACGa -5'
12916 3' -57.6 NC_003387.1 + 439 0.69 0.388275
Target:  5'- -uGGCGGUUaagucuGUCGCCGCCG-CG-GCg -3'
miRNA:   3'- cuCCGCCAG------UAGUGGUGGCuGCaCGa -5'
12916 3' -57.6 NC_003387.1 + 27136 0.7 0.353748
Target:  5'- cGAGGCcgugcccgccggGGUCggCGCCGCCGgggaACGUGUg -3'
miRNA:   3'- -CUCCG------------CCAGuaGUGGUGGC----UGCACGa -5'
12916 3' -57.6 NC_003387.1 + 32850 0.7 0.353748
Target:  5'- cGGGGCGGUuccgCGUCGCCgacugcGCCGAC-UGCc -3'
miRNA:   3'- -CUCCGCCA----GUAGUGG------UGGCUGcACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.