miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12916 5' -55.3 NC_003387.1 + 28554 0.66 0.728764
Target:  5'- --uGGGcGACcgAGGcGGCGAUcgccgucgacGACGCCCu -3'
miRNA:   3'- cuuCCCaCUG--UUC-CCGCUG----------UUGCGGG- -5'
12916 5' -55.3 NC_003387.1 + 10929 0.66 0.718102
Target:  5'- -cAGGcGUGcGCcAGGucGCGGCAcGCGCCCg -3'
miRNA:   3'- cuUCC-CAC-UGuUCC--CGCUGU-UGCGGG- -5'
12916 5' -55.3 NC_003387.1 + 3570 0.66 0.718102
Target:  5'- cGAGGGcGGCGugaauGGuaaCGGCGGCGCCUg -3'
miRNA:   3'- cUUCCCaCUGUu----CCc--GCUGUUGCGGG- -5'
12916 5' -55.3 NC_003387.1 + 28097 0.66 0.707354
Target:  5'- ------cGACcAGGGCGGCAACGaCCUu -3'
miRNA:   3'- cuucccaCUGuUCCCGCUGUUGC-GGG- -5'
12916 5' -55.3 NC_003387.1 + 43107 0.66 0.707354
Target:  5'- --cGGGU-ACGAGcGCGACGGCGCg- -3'
miRNA:   3'- cuuCCCAcUGUUCcCGCUGUUGCGgg -5'
12916 5' -55.3 NC_003387.1 + 49198 0.66 0.696533
Target:  5'- uGggGcGGcGGCGGGGGC-ACuGGCGCCg -3'
miRNA:   3'- -CuuC-CCaCUGUUCCCGcUG-UUGCGGg -5'
12916 5' -55.3 NC_003387.1 + 10117 0.66 0.696533
Target:  5'- --uGGG-GGCGAGGGUcaccgGGCGGgGCUCg -3'
miRNA:   3'- cuuCCCaCUGUUCCCG-----CUGUUgCGGG- -5'
12916 5' -55.3 NC_003387.1 + 30427 0.66 0.696533
Target:  5'- --cGGGUGAaacCGAGgccgaGGCGguggccgagcACGGCGCCCu -3'
miRNA:   3'- cuuCCCACU---GUUC-----CCGC----------UGUUGCGGG- -5'
12916 5' -55.3 NC_003387.1 + 22581 0.66 0.685648
Target:  5'- cGAGGGUGGCcucGGuGCGGCcACGgUCg -3'
miRNA:   3'- cUUCCCACUGuu-CC-CGCUGuUGCgGG- -5'
12916 5' -55.3 NC_003387.1 + 12645 0.66 0.685648
Target:  5'- cGAAGgacGGUGuuGCGcuGGGCGACAGCGUg- -3'
miRNA:   3'- -CUUC---CCAC--UGUu-CCCGCUGUUGCGgg -5'
12916 5' -55.3 NC_003387.1 + 16973 0.66 0.674712
Target:  5'- -cGGGGUGcGCGuagauguugcGGGCGAUuuCGUCCa -3'
miRNA:   3'- cuUCCCAC-UGUu---------CCCGCUGuuGCGGG- -5'
12916 5' -55.3 NC_003387.1 + 40139 0.67 0.65273
Target:  5'- cGAcGGGUGAUcGGGGUa--AGCGUCCu -3'
miRNA:   3'- -CUuCCCACUGuUCCCGcugUUGCGGG- -5'
12916 5' -55.3 NC_003387.1 + 1187 0.67 0.65273
Target:  5'- cGgcGGGcgcaggGGCAAGGGUggccgucgacggGGCAugGCUCg -3'
miRNA:   3'- -CuuCCCa-----CUGUUCCCG------------CUGUugCGGG- -5'
12916 5' -55.3 NC_003387.1 + 1837 0.67 0.641705
Target:  5'- cGAAGGGcugcggccuguuUGAgAAcGGCGuCAACGCCg -3'
miRNA:   3'- -CUUCCC------------ACUgUUcCCGCuGUUGCGGg -5'
12916 5' -55.3 NC_003387.1 + 3837 0.67 0.630671
Target:  5'- -cAGGGcGGCGcGGuaGGCGGCGCCg -3'
miRNA:   3'- cuUCCCaCUGUuCCcgCUGUUGCGGg -5'
12916 5' -55.3 NC_003387.1 + 26581 0.67 0.630671
Target:  5'- -cGGGGUcaggccgcGCGAGcGGCGACGgacGCGCCg -3'
miRNA:   3'- cuUCCCAc-------UGUUC-CCGCUGU---UGCGGg -5'
12916 5' -55.3 NC_003387.1 + 5225 0.67 0.619639
Target:  5'- -cGGGGUGAUc-GGGUGAaccGCGaCCCg -3'
miRNA:   3'- cuUCCCACUGuuCCCGCUgu-UGC-GGG- -5'
12916 5' -55.3 NC_003387.1 + 33743 0.67 0.619639
Target:  5'- uAAGcGGcaccccGGCAAGGGCaacGGCGGCGCCg -3'
miRNA:   3'- cUUC-CCa-----CUGUUCCCG---CUGUUGCGGg -5'
12916 5' -55.3 NC_003387.1 + 31314 0.67 0.619639
Target:  5'- --cGGGccGcCGGGGGCGuuGGCGUCCa -3'
miRNA:   3'- cuuCCCa-CuGUUCCCGCugUUGCGGG- -5'
12916 5' -55.3 NC_003387.1 + 5549 0.67 0.619639
Target:  5'- cGAGGGcGACcaccAGGGCcaccGCggUGCCCg -3'
miRNA:   3'- cUUCCCaCUGu---UCCCGc---UGuuGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.