miRNA display CGI


Results 21 - 40 of 436 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12917 3' -53.2 NC_003387.1 + 37769 0.66 0.844499
Target:  5'- aCC-UCAAgGGCGugcucaagcGCGCCuGGGCGCa -3'
miRNA:   3'- gGGcAGUUgCUGU---------UGUGGuUCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 4050 0.66 0.844499
Target:  5'- uCCUGg-GGCGACGAUuCCGAGGUGgUg -3'
miRNA:   3'- -GGGCagUUGCUGUUGuGGUUCCGCgG- -5'
12917 3' -53.2 NC_003387.1 + 3507 0.66 0.844499
Target:  5'- gCUGUCgAACGAacCGGCGCCA--GUGCCc -3'
miRNA:   3'- gGGCAG-UUGCU--GUUGUGGUucCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 43801 0.66 0.844499
Target:  5'- gCCCGcuuccUCGACGAguGCugCAcgaucggcgaGGGCgagGCCg -3'
miRNA:   3'- -GGGC-----AGUUGCUguUGugGU----------UCCG---CGG- -5'
12917 3' -53.2 NC_003387.1 + 7322 0.66 0.843629
Target:  5'- aCCGUC-ACGAuCGGCucgggcgGCCG-GGCGCa -3'
miRNA:   3'- gGGCAGuUGCU-GUUG-------UGGUuCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 26036 0.66 0.839247
Target:  5'- aCCCGcCGACGGCGccgcACAUCGaguaccacauucgcgAGGCugcGCCc -3'
miRNA:   3'- -GGGCaGUUGCUGU----UGUGGU---------------UCCG---CGG- -5'
12917 3' -53.2 NC_003387.1 + 30240 0.66 0.835701
Target:  5'- gCCGUCGccCGguACGACGCCGcGGuCGUCg -3'
miRNA:   3'- gGGCAGUu-GC--UGUUGUGGUuCC-GCGG- -5'
12917 3' -53.2 NC_003387.1 + 20751 0.66 0.835701
Target:  5'- aCCUGugcUCGAUG-CGcCugCAAGGCGCg -3'
miRNA:   3'- -GGGC---AGUUGCuGUuGugGUUCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 5175 0.66 0.835701
Target:  5'- aUCCGUauGCGggGCAggGCAUCAAGGC-CCg -3'
miRNA:   3'- -GGGCAguUGC--UGU--UGUGGUUCCGcGG- -5'
12917 3' -53.2 NC_003387.1 + 52478 0.66 0.835701
Target:  5'- aCCCu----CGACAACAUUggGGCGgCu -3'
miRNA:   3'- -GGGcaguuGCUGUUGUGGuuCCGCgG- -5'
12917 3' -53.2 NC_003387.1 + 14562 0.66 0.835701
Target:  5'- gCgGUCGACGcCGccuggccguucuACGCCAA-GCGCCc -3'
miRNA:   3'- gGgCAGUUGCuGU------------UGUGGUUcCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 2107 0.66 0.835701
Target:  5'- uCCUGUUGACGugAuCGCCGA--CGCCc -3'
miRNA:   3'- -GGGCAGUUGCugUuGUGGUUccGCGG- -5'
12917 3' -53.2 NC_003387.1 + 2596 0.66 0.835701
Target:  5'- uUCUGcgUAACGGCGAUcgugACC-AGGCGCUc -3'
miRNA:   3'- -GGGCa-GUUGCUGUUG----UGGuUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 39834 0.66 0.835701
Target:  5'- gCCGUCGaggccgcucACGuuGACGCCAgacggcaaagacAGGCccGCCg -3'
miRNA:   3'- gGGCAGU---------UGCugUUGUGGU------------UCCG--CGG- -5'
12917 3' -53.2 NC_003387.1 + 24854 0.66 0.835701
Target:  5'- uCCUG-Cu-CGACcGCGCCGGugucgaucguGGCGCCg -3'
miRNA:   3'- -GGGCaGuuGCUGuUGUGGUU----------CCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 32180 0.66 0.83481
Target:  5'- aUCGgcgCAGcCGACgAACACCGcaggggcAGGCGCa -3'
miRNA:   3'- gGGCa--GUU-GCUG-UUGUGGU-------UCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 51800 0.66 0.83302
Target:  5'- aCCGUCGuguuaggcgucuugAUGcACAGCGCgaacaCGAGcGCGCCg -3'
miRNA:   3'- gGGCAGU--------------UGC-UGUUGUG-----GUUC-CGCGG- -5'
12917 3' -53.2 NC_003387.1 + 51739 0.66 0.830319
Target:  5'- cCCCGgucgagcgccUCGGCGGCGGCAuacacaacuacccgcCCGacugguggcuGGGCGUCg -3'
miRNA:   3'- -GGGC----------AGUUGCUGUUGU---------------GGU----------UCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 2847 0.66 0.826688
Target:  5'- -aCGcCGACGACAugAUCGucggugAGGuCGCCc -3'
miRNA:   3'- ggGCaGUUGCUGUugUGGU------UCC-GCGG- -5'
12917 3' -53.2 NC_003387.1 + 13313 0.66 0.826688
Target:  5'- gCC-UCGACGGCAGCgACCuGGGCa-- -3'
miRNA:   3'- gGGcAGUUGCUGUUG-UGGuUCCGcgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.