miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12917 5' -58.4 NC_003387.1 + 51866 0.66 0.563596
Target:  5'- cGguGGCCCCGGUGaucgcgaaGGcCGUCGcgagaagcucGUCGa -3'
miRNA:   3'- -CguCUGGGGCCACa-------CCaGCAGC----------CAGU- -5'
12917 5' -58.4 NC_003387.1 + 22584 0.66 0.553099
Target:  5'- gGguGGCCUCGGUGcGG-CcaCGGUCGa -3'
miRNA:   3'- -CguCUGGGGCCACaCCaGcaGCCAGU- -5'
12917 5' -58.4 NC_003387.1 + 11411 0.67 0.511765
Target:  5'- cGCGaucGGCCCCGaG-GUGcuGUCGUCGGUg- -3'
miRNA:   3'- -CGU---CUGGGGC-CaCAC--CAGCAGCCAgu -5'
12917 5' -58.4 NC_003387.1 + 41752 0.67 0.491577
Target:  5'- gGCuGGCCgCGGUGUGGUgCGaccUCGacGUCAa -3'
miRNA:   3'- -CGuCUGGgGCCACACCA-GC---AGC--CAGU- -5'
12917 5' -58.4 NC_003387.1 + 8373 0.67 0.481622
Target:  5'- uGCAGGCCgCGGUGUucuGGaCGaUCGGccUCAa -3'
miRNA:   3'- -CGUCUGGgGCCACA---CCaGC-AGCC--AGU- -5'
12917 5' -58.4 NC_003387.1 + 27790 0.69 0.414925
Target:  5'- gGCGG-CCCCGccGUcGGUCGcggCGGUCAc -3'
miRNA:   3'- -CGUCuGGGGCcaCA-CCAGCa--GCCAGU- -5'
12917 5' -58.4 NC_003387.1 + 49648 0.7 0.354207
Target:  5'- aGCuuGGCCCCGaGUG-GGUCGacgucggagCGGUCGa -3'
miRNA:   3'- -CGu-CUGGGGC-CACaCCAGCa--------GCCAGU- -5'
12917 5' -58.4 NC_003387.1 + 45558 0.71 0.29284
Target:  5'- --cGGCCCCGGUGuUGGU-GUCGGg-- -3'
miRNA:   3'- cguCUGGGGCCAC-ACCAgCAGCCagu -5'
12917 5' -58.4 NC_003387.1 + 5007 0.71 0.29284
Target:  5'- uGCGGGCCugcgCCGGUGUcauGUgGUUGGUCAu -3'
miRNA:   3'- -CGUCUGG----GGCCACAc--CAgCAGCCAGU- -5'
12917 5' -58.4 NC_003387.1 + 35579 0.72 0.26541
Target:  5'- cGCGGGCCgCCGGUGacagccGGUCGa-GGUCGu -3'
miRNA:   3'- -CGUCUGG-GGCCACa-----CCAGCagCCAGU- -5'
12917 5' -58.4 NC_003387.1 + 50465 0.73 0.234094
Target:  5'- aGCcGACCCCGGcccgcgaGGUCGUCGG-CAa -3'
miRNA:   3'- -CGuCUGGGGCCaca----CCAGCAGCCaGU- -5'
12917 5' -58.4 NC_003387.1 + 17959 0.98 0.003701
Target:  5'- gGCAGA-CCCGGUGUGGUCGUCGGUCAa -3'
miRNA:   3'- -CGUCUgGGGCCACACCAGCAGCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.