miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1292 3' -54.8 NC_001317.1 + 27461 0.66 0.556712
Target:  5'- aAAAACugCGUCA--CCGACUgGCGCGa -3'
miRNA:   3'- -UUUUGugGUGGUuaGGCUGGgCGCGC- -5'
1292 3' -54.8 NC_001317.1 + 612 0.66 0.545399
Target:  5'- cAGAGCGCgACCGAcgUCGAaucgCUGCGCGa -3'
miRNA:   3'- -UUUUGUGgUGGUUa-GGCUg---GGCGCGC- -5'
1292 3' -54.8 NC_001317.1 + 16697 0.67 0.511942
Target:  5'- --uGCACgGCCAGcucaCCGGCCuCGCGUu -3'
miRNA:   3'- uuuUGUGgUGGUUa---GGCUGG-GCGCGc -5'
1292 3' -54.8 NC_001317.1 + 19628 0.67 0.502067
Target:  5'- aGAAGCGCCgaacccugccaGCCAAgccacaacgucagcaCCGcCCCGCGCa -3'
miRNA:   3'- -UUUUGUGG-----------UGGUUa--------------GGCuGGGCGCGc -5'
1292 3' -54.8 NC_001317.1 + 10505 0.68 0.458218
Target:  5'- --cGCAUCACCcgcgagCCGACCgGCGUc -3'
miRNA:   3'- uuuUGUGGUGGuua---GGCUGGgCGCGc -5'
1292 3' -54.8 NC_001317.1 + 6575 0.69 0.379043
Target:  5'- uAAACcuGCCACCAAaCCGGCagcaaaGCGCGg -3'
miRNA:   3'- uUUUG--UGGUGGUUaGGCUGgg----CGCGC- -5'
1292 3' -54.8 NC_001317.1 + 2434 0.69 0.379043
Target:  5'- uGGAGCGCCACCAGUggaagggcaUgGACuuugCCGCGCa -3'
miRNA:   3'- -UUUUGUGGUGGUUA---------GgCUG----GGCGCGc -5'
1292 3' -54.8 NC_001317.1 + 442 0.7 0.343045
Target:  5'- -cAGCGCCGCCGAcCUGAUggaCGCGCa -3'
miRNA:   3'- uuUUGUGGUGGUUaGGCUGg--GCGCGc -5'
1292 3' -54.8 NC_001317.1 + 15438 0.7 0.317704
Target:  5'- -uGACGCUGCCGAagCUGACCCGCaaGCu -3'
miRNA:   3'- uuUUGUGGUGGUUa-GGCUGGGCG--CGc -5'
1292 3' -54.8 NC_001317.1 + 9931 0.7 0.30797
Target:  5'- gGGAGC-CCACCAugugcgcgaaCGACCgGCGCGg -3'
miRNA:   3'- -UUUUGuGGUGGUuag-------GCUGGgCGCGC- -5'
1292 3' -54.8 NC_001317.1 + 14755 0.72 0.248212
Target:  5'- cGAACGCCACCGccacggcauacgccaCCG-CCCGCGCa -3'
miRNA:   3'- uUUUGUGGUGGUua-------------GGCuGGGCGCGc -5'
1292 3' -54.8 NC_001317.1 + 16154 0.75 0.155227
Target:  5'- ---cCGCCGCCAGaCUGACgCCGCGCa -3'
miRNA:   3'- uuuuGUGGUGGUUaGGCUG-GGCGCGc -5'
1292 3' -54.8 NC_001317.1 + 11030 0.76 0.138204
Target:  5'- -uGACACCACCAuccccCCGACCCcCGCu -3'
miRNA:   3'- uuUUGUGGUGGUua---GGCUGGGcGCGc -5'
1292 3' -54.8 NC_001317.1 + 16673 1.06 0.000853
Target:  5'- aAAAACACCACCAAUCCGACCCGCGCGc -3'
miRNA:   3'- -UUUUGUGGUGGUUAGGCUGGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.