miRNA display CGI


Results 21 - 40 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12924 3' -67.3 NC_003387.1 + 34015 0.66 0.210922
Target:  5'- uGCCgcGCCcUGGCGcuGCGCGaCCCGCa -3'
miRNA:   3'- cCGG--CGGaGCCGCu-CGCGCcGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 46294 0.66 0.210922
Target:  5'- aGGCCGagcaGGCGGcGCaGCGGgCCGCu -3'
miRNA:   3'- -CCGGCggagCCGCU-CG-CGCCgGGCGc -5'
12924 3' -67.3 NC_003387.1 + 23271 0.66 0.210922
Target:  5'- cGCCGuUCUCGaucgcgaggauaGCGAccGCGCGGgCCGCu -3'
miRNA:   3'- cCGGC-GGAGC------------CGCU--CGCGCCgGGCGc -5'
12924 3' -67.3 NC_003387.1 + 37544 0.66 0.210922
Target:  5'- gGGCCuCCUCGuCGAucaccuCGCGGCgCGCGu -3'
miRNA:   3'- -CCGGcGGAGCcGCUc-----GCGCCGgGCGC- -5'
12924 3' -67.3 NC_003387.1 + 4324 0.66 0.210922
Target:  5'- uGGuuGCC-CaGGCu-GCGCccGGCCCGCu -3'
miRNA:   3'- -CCggCGGaG-CCGcuCGCG--CCGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 41962 0.66 0.210922
Target:  5'- aGGCuCGUacCGGCGAuCGCGGCCgugucaGCGg -3'
miRNA:   3'- -CCG-GCGgaGCCGCUcGCGCCGGg-----CGC- -5'
12924 3' -67.3 NC_003387.1 + 46102 0.66 0.209382
Target:  5'- cGGCCGCCgacauguucCGGCugcugcgguggcucGGGCGUgaGGUgCCGCGg -3'
miRNA:   3'- -CCGGCGGa--------GCCG--------------CUCGCG--CCG-GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 25481 0.66 0.205827
Target:  5'- gGGCCGCCUCGaccGCGcgugucAGCuCGGCCgGg- -3'
miRNA:   3'- -CCGGCGGAGC---CGC------UCGcGCCGGgCgc -5'
12924 3' -67.3 NC_003387.1 + 14160 0.66 0.205827
Target:  5'- uGGCa-CCUCGcCGGGC-CGGgCCGCGg -3'
miRNA:   3'- -CCGgcGGAGCcGCUCGcGCCgGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 50160 0.66 0.205323
Target:  5'- gGGUCGgCguacaCGGCGAGgaucugcCGCGGCgaCCGCGu -3'
miRNA:   3'- -CCGGCgGa----GCCGCUC-------GCGCCG--GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 1825 0.66 0.200838
Target:  5'- cGGCCGauaUGGCGAaggGCuGCGGCCUGUu -3'
miRNA:   3'- -CCGGCggaGCCGCU---CG-CGCCGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 52589 0.66 0.200838
Target:  5'- -aCCGCC-CGGCGAGCGa-GCUCaGCa -3'
miRNA:   3'- ccGGCGGaGCCGCUCGCgcCGGG-CGc -5'
12924 3' -67.3 NC_003387.1 + 51498 0.66 0.200838
Target:  5'- cGGCCaGCaggaUCaGCGGGUuaGGCgCCGCGu -3'
miRNA:   3'- -CCGG-CGg---AGcCGCUCGcgCCG-GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 42727 0.66 0.200838
Target:  5'- cGGCCGCgggaaCGGguCGGGUGCGcCCUGCGg -3'
miRNA:   3'- -CCGGCGga---GCC--GCUCGCGCcGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 27270 0.66 0.200838
Target:  5'- aGCCGCgaC-GCGGGCaGCGcGCCCuGCGa -3'
miRNA:   3'- cCGGCGgaGcCGCUCG-CGC-CGGG-CGC- -5'
12924 3' -67.3 NC_003387.1 + 4759 0.66 0.200838
Target:  5'- uGCCGCCcagcucgCGGUGcuuCGCGGCCCacacgGCGu -3'
miRNA:   3'- cCGGCGGa------GCCGCuc-GCGCCGGG-----CGC- -5'
12924 3' -67.3 NC_003387.1 + 36723 0.66 0.200838
Target:  5'- cGGCgGCCguacCGGaccaGccAGUGCGGCCCGa- -3'
miRNA:   3'- -CCGgCGGa---GCCg---C--UCGCGCCGGGCgc -5'
12924 3' -67.3 NC_003387.1 + 20369 0.66 0.200345
Target:  5'- -cUCGCCUUgaaGGCGGGCGUGGgcgguaaCCCGUa -3'
miRNA:   3'- ccGGCGGAG---CCGCUCGCGCC-------GGGCGc -5'
12924 3' -67.3 NC_003387.1 + 17505 0.66 0.200345
Target:  5'- cGGCCGUagugCUCGGCcAGCaugcgcaGCGGCUCGg- -3'
miRNA:   3'- -CCGGCG----GAGCCGcUCG-------CGCCGGGCgc -5'
12924 3' -67.3 NC_003387.1 + 194 0.67 0.195955
Target:  5'- cGGCCGCCagcUCGGCGGcuugucgcucuuGuCGCGGUugcacUUGCGg -3'
miRNA:   3'- -CCGGCGG---AGCCGCU------------C-GCGCCG-----GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.