miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12924 5' -56 NC_003387.1 + 961 0.72 0.329585
Target:  5'- aGUCGggcgGGuAGUUGUguaugccgcCGCCGAGGCGCc -3'
miRNA:   3'- -CAGCa---CCuUUAGCA---------GCGGCUCCGCGa -5'
12924 5' -56 NC_003387.1 + 2879 0.72 0.329585
Target:  5'- cGUCGUacaucggcaGGAAcUCGcUCGCCG-GGCGCg -3'
miRNA:   3'- -CAGCA---------CCUUuAGC-AGCGGCuCCGCGa -5'
12924 5' -56 NC_003387.1 + 6218 0.68 0.525653
Target:  5'- -aCGUGGGccaaccgGAcccUCGUCGCCGAGGaaauCGCc -3'
miRNA:   3'- caGCACCU-------UU---AGCAGCGGCUCC----GCGa -5'
12924 5' -56 NC_003387.1 + 6448 0.69 0.474018
Target:  5'- gGUCGUGGGcggCGUCGCCaacGAguccgacauugucGGCGCg -3'
miRNA:   3'- -CAGCACCUuuaGCAGCGG---CU-------------CCGCGa -5'
12924 5' -56 NC_003387.1 + 9674 0.7 0.40725
Target:  5'- -cCGUGGAAugGUU-UCGUCGAGGCGUg -3'
miRNA:   3'- caGCACCUU--UAGcAGCGGCUCCGCGa -5'
12924 5' -56 NC_003387.1 + 11435 0.7 0.426001
Target:  5'- cGUCGaGGuuucgcUCGUCGCCGucgaggGGGCGCa -3'
miRNA:   3'- -CAGCaCCuuu---AGCAGCGGC------UCCGCGa -5'
12924 5' -56 NC_003387.1 + 11442 0.68 0.555487
Target:  5'- cUCGUGcccgcgcugcagcUCGcCGCCGGGGCGCUc -3'
miRNA:   3'- cAGCACcuuu---------AGCaGCGGCUCCGCGA- -5'
12924 5' -56 NC_003387.1 + 12805 0.66 0.66791
Target:  5'- cUCGcaacGAccgcAGUCGUCGCCGGGGCaGUUg -3'
miRNA:   3'- cAGCac--CU----UUAGCAGCGGCUCCG-CGA- -5'
12924 5' -56 NC_003387.1 + 13650 0.66 0.64602
Target:  5'- cGUCGgcGGcgGcUCgGUCGCCGAgGGCGCc -3'
miRNA:   3'- -CAGCa-CCuuU-AG-CAGCGGCU-CCGCGa -5'
12924 5' -56 NC_003387.1 + 14685 0.78 0.142299
Target:  5'- -aCGUGGGAGUCGUgGCCGAaguuccuGGUGCg -3'
miRNA:   3'- caGCACCUUUAGCAgCGGCU-------CCGCGa -5'
12924 5' -56 NC_003387.1 + 15491 0.7 0.455066
Target:  5'- cUCGUcGAAAUCGUCGCCcacGGcGGCGUUu -3'
miRNA:   3'- cAGCAcCUUUAGCAGCGG---CU-CCGCGA- -5'
12924 5' -56 NC_003387.1 + 18853 0.72 0.329586
Target:  5'- aUCGaccu-GUCGUCGcCCGAGGCGCUc -3'
miRNA:   3'- cAGCaccuuUAGCAGC-GGCUCCGCGA- -5'
12924 5' -56 NC_003387.1 + 19602 0.67 0.612019
Target:  5'- -gUGUGGcAGUCGUuccuugaCGCCGcgaaGGGCGCg -3'
miRNA:   3'- caGCACCuUUAGCA-------GCGGC----UCCGCGa -5'
12924 5' -56 NC_003387.1 + 21562 0.69 0.475026
Target:  5'- cGUCGUGcAGAcCGUgGCCcAGGCGCg -3'
miRNA:   3'- -CAGCACcUUUaGCAgCGGcUCCGCGa -5'
12924 5' -56 NC_003387.1 + 21730 1.07 0.001227
Target:  5'- gGUCGUGGAAAUCGUCGCCGAGGCGCUc -3'
miRNA:   3'- -CAGCACCUUUAGCAGCGGCUCCGCGA- -5'
12924 5' -56 NC_003387.1 + 22681 0.68 0.558714
Target:  5'- cUCGUGGGcggUGUCGaCGGcGGCGCUg -3'
miRNA:   3'- cAGCACCUuuaGCAGCgGCU-CCGCGA- -5'
12924 5' -56 NC_003387.1 + 25975 0.7 0.455066
Target:  5'- aUCGcUGGggGUaugcCGcUCGCCGGGGuCGCg -3'
miRNA:   3'- cAGC-ACCuuUA----GC-AGCGGCUCC-GCGa -5'
12924 5' -56 NC_003387.1 + 26630 0.69 0.485169
Target:  5'- aGUCGaucgcgugcUGGAAAUaCGUcaCGCCG-GGCGCa -3'
miRNA:   3'- -CAGC---------ACCUUUA-GCA--GCGGCuCCGCGa -5'
12924 5' -56 NC_003387.1 + 29694 0.68 0.558715
Target:  5'- -aCGUGGc---CGagGUCGAGGCGCUc -3'
miRNA:   3'- caGCACCuuuaGCagCGGCUCCGCGA- -5'
12924 5' -56 NC_003387.1 + 30252 0.71 0.380114
Target:  5'- gGUCGUcGggGUCGgCGCCGGGGUcggGCa -3'
miRNA:   3'- -CAGCAcCuuUAGCaGCGGCUCCG---CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.