miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12924 5' -56 NC_003387.1 + 30252 0.71 0.380114
Target:  5'- gGUCGUcGggGUCGgCGCCGGGGUcggGCa -3'
miRNA:   3'- -CAGCAcCuuUAGCaGCGGCUCCG---CGa -5'
12924 5' -56 NC_003387.1 + 18853 0.72 0.329586
Target:  5'- aUCGaccu-GUCGUCGcCCGAGGCGCUc -3'
miRNA:   3'- cAGCaccuuUAGCAGC-GGCUCCGCGA- -5'
12924 5' -56 NC_003387.1 + 2879 0.72 0.329585
Target:  5'- cGUCGUacaucggcaGGAAcUCGcUCGCCG-GGCGCg -3'
miRNA:   3'- -CAGCA---------CCUUuAGC-AGCGGCuCCGCGa -5'
12924 5' -56 NC_003387.1 + 961 0.72 0.329585
Target:  5'- aGUCGggcgGGuAGUUGUguaugccgcCGCCGAGGCGCc -3'
miRNA:   3'- -CAGCa---CCuUUAGCA---------GCGGCUCCGCGa -5'
12924 5' -56 NC_003387.1 + 50415 0.74 0.24388
Target:  5'- cGUCGggcGGcAGAUCGUCGCCucGGCGUa -3'
miRNA:   3'- -CAGCa--CC-UUUAGCAGCGGcuCCGCGa -5'
12924 5' -56 NC_003387.1 + 14685 0.78 0.142299
Target:  5'- -aCGUGGGAGUCGUgGCCGAaguuccuGGUGCg -3'
miRNA:   3'- caGCACCUUUAGCAgCGGCU-------CCGCGa -5'
12924 5' -56 NC_003387.1 + 34513 0.79 0.111048
Target:  5'- gGUCGccGGucgucgCGUCGCCGAGGCGCa -3'
miRNA:   3'- -CAGCa-CCuuua--GCAGCGGCUCCGCGa -5'
12924 5' -56 NC_003387.1 + 21730 1.07 0.001227
Target:  5'- gGUCGUGGAAAUCGUCGCCGAGGCGCUc -3'
miRNA:   3'- -CAGCACCUUUAGCAGCGGCUCCGCGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.