Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12924 | 5' | -56 | NC_003387.1 | + | 30252 | 0.71 | 0.380114 |
Target: 5'- gGUCGUcGggGUCGgCGCCGGGGUcggGCa -3' miRNA: 3'- -CAGCAcCuuUAGCaGCGGCUCCG---CGa -5' |
|||||||
12924 | 5' | -56 | NC_003387.1 | + | 18853 | 0.72 | 0.329586 |
Target: 5'- aUCGaccu-GUCGUCGcCCGAGGCGCUc -3' miRNA: 3'- cAGCaccuuUAGCAGC-GGCUCCGCGA- -5' |
|||||||
12924 | 5' | -56 | NC_003387.1 | + | 2879 | 0.72 | 0.329585 |
Target: 5'- cGUCGUacaucggcaGGAAcUCGcUCGCCG-GGCGCg -3' miRNA: 3'- -CAGCA---------CCUUuAGC-AGCGGCuCCGCGa -5' |
|||||||
12924 | 5' | -56 | NC_003387.1 | + | 961 | 0.72 | 0.329585 |
Target: 5'- aGUCGggcgGGuAGUUGUguaugccgcCGCCGAGGCGCc -3' miRNA: 3'- -CAGCa---CCuUUAGCA---------GCGGCUCCGCGa -5' |
|||||||
12924 | 5' | -56 | NC_003387.1 | + | 50415 | 0.74 | 0.24388 |
Target: 5'- cGUCGggcGGcAGAUCGUCGCCucGGCGUa -3' miRNA: 3'- -CAGCa--CC-UUUAGCAGCGGcuCCGCGa -5' |
|||||||
12924 | 5' | -56 | NC_003387.1 | + | 14685 | 0.78 | 0.142299 |
Target: 5'- -aCGUGGGAGUCGUgGCCGAaguuccuGGUGCg -3' miRNA: 3'- caGCACCUUUAGCAgCGGCU-------CCGCGa -5' |
|||||||
12924 | 5' | -56 | NC_003387.1 | + | 34513 | 0.79 | 0.111048 |
Target: 5'- gGUCGccGGucgucgCGUCGCCGAGGCGCa -3' miRNA: 3'- -CAGCa-CCuuua--GCAGCGGCUCCGCGa -5' |
|||||||
12924 | 5' | -56 | NC_003387.1 | + | 21730 | 1.07 | 0.001227 |
Target: 5'- gGUCGUGGAAAUCGUCGCCGAGGCGCUc -3' miRNA: 3'- -CAGCACCUUUAGCAGCGGCUCCGCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home