miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12927 3' -53 NC_003387.1 + 21972 0.66 0.863114
Target:  5'- aCGcCCGACACGgugcUGCCcgACGAgccgggucaCCUGcCCg -3'
miRNA:   3'- -GC-GGCUGUGU----AUGGa-UGCU---------GGACuGG- -5'
12927 3' -53 NC_003387.1 + 28077 0.66 0.863114
Target:  5'- uCGCUG-CGCGUcgaACCUAuCGACCagGGCg -3'
miRNA:   3'- -GCGGCuGUGUA---UGGAU-GCUGGa-CUGg -5'
12927 3' -53 NC_003387.1 + 42040 0.66 0.863114
Target:  5'- gCGCCagGGCGCcaagaucgACCgcggcgugUACGACCUGGCg -3'
miRNA:   3'- -GCGG--CUGUGua------UGG--------AUGCUGGACUGg -5'
12927 3' -53 NC_003387.1 + 22642 0.66 0.863114
Target:  5'- cCGCCGACgacugagcGCAUGCUcGCuGGCCcUGAUa -3'
miRNA:   3'- -GCGGCUG--------UGUAUGGaUG-CUGG-ACUGg -5'
12927 3' -53 NC_003387.1 + 46517 0.66 0.863114
Target:  5'- uCGCuCGGCgACugcACCaacgGCGGCgUGACCa -3'
miRNA:   3'- -GCG-GCUG-UGua-UGGa---UGCUGgACUGG- -5'
12927 3' -53 NC_003387.1 + 8038 0.66 0.863114
Target:  5'- gGCCG-CGCGaGCCUaucugcucgACGAgCUGGCg -3'
miRNA:   3'- gCGGCuGUGUaUGGA---------UGCUgGACUGg -5'
12927 3' -53 NC_003387.1 + 48081 0.66 0.863114
Target:  5'- gCGCCGGgccuuguccuUAUcgGCCUugGccGCCUuGGCCg -3'
miRNA:   3'- -GCGGCU----------GUGuaUGGAugC--UGGA-CUGG- -5'
12927 3' -53 NC_003387.1 + 6800 0.66 0.863114
Target:  5'- aCGCUcgGGCACGUGCCgACGuACUgcaGAUCg -3'
miRNA:   3'- -GCGG--CUGUGUAUGGaUGC-UGGa--CUGG- -5'
12927 3' -53 NC_003387.1 + 40135 0.66 0.860643
Target:  5'- gGcCCGACGgGUGaucgggguaagcguCCUGCGACCgccaGCCg -3'
miRNA:   3'- gC-GGCUGUgUAU--------------GGAUGCUGGac--UGG- -5'
12927 3' -53 NC_003387.1 + 51170 0.66 0.854793
Target:  5'- gCGCCGguauGCACGUacGCCUgGCGAuCCUcGGCa -3'
miRNA:   3'- -GCGGC----UGUGUA--UGGA-UGCU-GGA-CUGg -5'
12927 3' -53 NC_003387.1 + 41446 0.66 0.854793
Target:  5'- -aCCGGCGCGgcCCUGacgcCGcCCUGACUg -3'
miRNA:   3'- gcGGCUGUGUauGGAU----GCuGGACUGG- -5'
12927 3' -53 NC_003387.1 + 27524 0.66 0.854793
Target:  5'- cCGCCGcCGCGagguUGCCUGuaugagccucgcUGACCgccucgGGCCg -3'
miRNA:   3'- -GCGGCuGUGU----AUGGAU------------GCUGGa-----CUGG- -5'
12927 3' -53 NC_003387.1 + 14807 0.66 0.854793
Target:  5'- gGUCGACACcgACCcgACGGCgCgcacGAUCa -3'
miRNA:   3'- gCGGCUGUGuaUGGa-UGCUG-Ga---CUGG- -5'
12927 3' -53 NC_003387.1 + 33478 0.66 0.854793
Target:  5'- uCGCCGAgGCGgucggcGCCcGCGAUCgcgUGAUCa -3'
miRNA:   3'- -GCGGCUgUGUa-----UGGaUGCUGG---ACUGG- -5'
12927 3' -53 NC_003387.1 + 41111 0.66 0.854793
Target:  5'- uGCUGGCGC-UGC--ACGACCgGAUCa -3'
miRNA:   3'- gCGGCUGUGuAUGgaUGCUGGaCUGG- -5'
12927 3' -53 NC_003387.1 + 48934 0.66 0.854793
Target:  5'- uGCCGGCGgGUugCUgGCGGgCgGGCUg -3'
miRNA:   3'- gCGGCUGUgUAugGA-UGCUgGaCUGG- -5'
12927 3' -53 NC_003387.1 + 7758 0.66 0.854793
Target:  5'- gCGgCGAuCGCG-GCCUgagccGCGGCCUGAgCCu -3'
miRNA:   3'- -GCgGCU-GUGUaUGGA-----UGCUGGACU-GG- -5'
12927 3' -53 NC_003387.1 + 24242 0.66 0.854793
Target:  5'- cCGCCGACgACGUcgaGCU--UGACCUcgggGGCCg -3'
miRNA:   3'- -GCGGCUG-UGUA---UGGauGCUGGA----CUGG- -5'
12927 3' -53 NC_003387.1 + 45669 0.66 0.854793
Target:  5'- cCGCCGcaGCGCccGCUUgACGuCCUGGCUu -3'
miRNA:   3'- -GCGGC--UGUGuaUGGA-UGCuGGACUGG- -5'
12927 3' -53 NC_003387.1 + 1826 0.66 0.854793
Target:  5'- gGCCGAUAUGgcgaagGgCUGCGGCCUGuuUg -3'
miRNA:   3'- gCGGCUGUGUa-----UgGAUGCUGGACugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.