Results 21 - 40 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 4147 | 0.69 | 0.546387 |
Target: 5'- -gGGUCGGCGagGcGGGCGUcgaUGCa -3' miRNA: 3'- uaCCAGCCGCagCuCCCGUAaaaGCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 24662 | 0.68 | 0.612573 |
Target: 5'- -aGGUCGccaGCGcCGAGGGUGac-UCGCg -3' miRNA: 3'- uaCCAGC---CGCaGCUCCCGUaaaAGCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 34805 | 0.68 | 0.657159 |
Target: 5'- gGUGuuGUCGuaGUCGGGGGCGUcgagaaugUUCGUc -3' miRNA: 3'- -UAC--CAGCcgCAGCUCCCGUAa-------AAGCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 8091 | 0.68 | 0.657159 |
Target: 5'- -cGGUCGGCGccaacccgccCGAGGGCGagcccagcUCGUa -3' miRNA: 3'- uaCCAGCCGCa---------GCUCCCGUaaa-----AGCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 50987 | 0.67 | 0.70136 |
Target: 5'- ----gCGGC--CGGGGGCGUUUUCGUu -3' miRNA: 3'- uaccaGCCGcaGCUCCCGUAAAAGCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 49492 | 0.67 | 0.712266 |
Target: 5'- -cGGUgcgcccgccCGGCGUCGAcgugucgcaaugGGGCuggacgUCGCa -3' miRNA: 3'- uaCCA---------GCCGCAGCU------------CCCGuaaa--AGCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 13659 | 0.66 | 0.723091 |
Target: 5'- -cGGcUCGGuCGcCGAGGGCGccgUCGa -3' miRNA: 3'- uaCC-AGCC-GCaGCUCCCGUaaaAGCg -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 616 | 0.66 | 0.733823 |
Target: 5'- -aGGcCGaGCagggCGAGGGCAgcgUCGCc -3' miRNA: 3'- uaCCaGC-CGca--GCUCCCGUaaaAGCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 47924 | 0.66 | 0.744451 |
Target: 5'- cUGGUCGGCGgcaGGcauGGGCAcga-CGCc -3' miRNA: 3'- uACCAGCCGCag-CU---CCCGUaaaaGCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 10428 | 0.66 | 0.754961 |
Target: 5'- -cGGcucgCGGCuGUCGGcGGGCAUcgacagCGCg -3' miRNA: 3'- uaCCa---GCCG-CAGCU-CCCGUAaaa---GCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 19587 | 0.66 | 0.754961 |
Target: 5'- cUGcUCGGCGUCGAcguGuGGCAg--UCGUu -3' miRNA: 3'- uACcAGCCGCAGCU---C-CCGUaaaAGCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 38506 | 0.66 | 0.720933 |
Target: 5'- --cGUgGGCGUgCGAGGGCGgcaagugagCGCc -3' miRNA: 3'- uacCAgCCGCA-GCUCCCGUaaaa-----GCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 25109 | 0.66 | 0.744451 |
Target: 5'- -cGGUCGGUGUCGucGaGGCcc--UCGUa -3' miRNA: 3'- uaCCAGCCGCAGCu-C-CCGuaaaAGCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 24138 | 0.66 | 0.775584 |
Target: 5'- -cGG-CGGUGUugagcuUGAGGGCGUcgUCGa -3' miRNA: 3'- uaCCaGCCGCA------GCUCCCGUAaaAGCg -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 18407 | 0.66 | 0.723091 |
Target: 5'- -gGGUCGGC--CGcGGGCAg---CGCg -3' miRNA: 3'- uaCCAGCCGcaGCuCCCGUaaaaGCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 2357 | 0.66 | 0.723091 |
Target: 5'- --cGUCGGCGUCGAGcGCcacguaCGCg -3' miRNA: 3'- uacCAGCCGCAGCUCcCGuaaaa-GCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 28157 | 0.66 | 0.733823 |
Target: 5'- --cGUCGGUGUUGAGcccgaacccGGCGacagUUUCGCu -3' miRNA: 3'- uacCAGCCGCAGCUC---------CCGUa---AAAGCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 11276 | 0.66 | 0.765343 |
Target: 5'- -aGGgCGGCGUC-AGGGCcg---CGCc -3' miRNA: 3'- uaCCaGCCGCAGcUCCCGuaaaaGCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 52586 | 0.66 | 0.765343 |
Target: 5'- -cGG-CGGCGcggaucgCGAGGGCGac--CGCa -3' miRNA: 3'- uaCCaGCCGCa------GCUCCCGUaaaaGCG- -5' |
|||||||
12927 | 5' | -54.2 | NC_003387.1 | + | 34519 | 0.66 | 0.765343 |
Target: 5'- -cGGUCGucGCGUcgcCGAGGcGCAcc-UCGCa -3' miRNA: 3'- uaCCAGC--CGCA---GCUCC-CGUaaaAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home