miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12927 5' -54.2 NC_003387.1 + 21931 0.69 0.601445
Target:  5'- uGUGGugcUCGGCGgCGGGGGCGg---CGg -3'
miRNA:   3'- -UACC---AGCCGCaGCUCCCGUaaaaGCg -5'
12927 5' -54.2 NC_003387.1 + 1753 0.69 0.590344
Target:  5'- -cGGccgcuaUCGGC-UCGGGGGCGc-UUCGCg -3'
miRNA:   3'- uaCC------AGCCGcAGCUCCCGUaaAAGCG- -5'
12927 5' -54.2 NC_003387.1 + 14644 0.69 0.590344
Target:  5'- -aGGgcaaGGC--CGAGGGCGUUaUCGCg -3'
miRNA:   3'- uaCCag--CCGcaGCUCCCGUAAaAGCG- -5'
12927 5' -54.2 NC_003387.1 + 28356 0.69 0.568259
Target:  5'- uUGGaaGGCGUCGugucgcAGGGCGgg--CGCa -3'
miRNA:   3'- uACCagCCGCAGC------UCCCGUaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 4147 0.69 0.546387
Target:  5'- -gGGUCGGCGagGcGGGCGUcgaUGCa -3'
miRNA:   3'- uaCCAGCCGCagCuCCCGUAaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 10011 0.7 0.53555
Target:  5'- -aGGUCGGCGUUGccGGUAUcggUCGg -3'
miRNA:   3'- uaCCAGCCGCAGCucCCGUAaa-AGCg -5'
12927 5' -54.2 NC_003387.1 + 45059 0.7 0.52479
Target:  5'- -aGGUCGccgagcGCGUCGAGGGCcgUccugggccggugUUCGg -3'
miRNA:   3'- uaCCAGC------CGCAGCUCCCGuaA------------AAGCg -5'
12927 5' -54.2 NC_003387.1 + 22051 0.7 0.493035
Target:  5'- -cGGUgcgacCGG-GUCGGGGGCGUUUcUCGUu -3'
miRNA:   3'- uaCCA-----GCCgCAGCUCCCGUAAA-AGCG- -5'
12927 5' -54.2 NC_003387.1 + 22683 0.71 0.482645
Target:  5'- cGUGGgCGGUGUCGAcGGCGg---CGCu -3'
miRNA:   3'- -UACCaGCCGCAGCUcCCGUaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 20166 0.71 0.482645
Target:  5'- --cGagGGCGUCGAGGGCGcggUUgaugCGCu -3'
miRNA:   3'- uacCagCCGCAGCUCCCGUa--AAa---GCG- -5'
12927 5' -54.2 NC_003387.1 + 25889 0.71 0.46219
Target:  5'- cUGGUgcucccCGGCGUCcAGGGCGg---CGCg -3'
miRNA:   3'- uACCA------GCCGCAGcUCCCGUaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 30260 0.71 0.46219
Target:  5'- -gGGUCGGCGcCGGggucGGGCAgccacUCGUa -3'
miRNA:   3'- uaCCAGCCGCaGCU----CCCGUaaa--AGCG- -5'
12927 5' -54.2 NC_003387.1 + 44858 0.71 0.46219
Target:  5'- -aGGUCGGUgccguagccGUCGGGGGCGUcggCGa -3'
miRNA:   3'- uaCCAGCCG---------CAGCUCCCGUAaaaGCg -5'
12927 5' -54.2 NC_003387.1 + 50900 0.71 0.46219
Target:  5'- -gGcGUCGaCGUCGAGGGCAUggUCa- -3'
miRNA:   3'- uaC-CAGCcGCAGCUCCCGUAaaAGcg -5'
12927 5' -54.2 NC_003387.1 + 5696 0.71 0.452136
Target:  5'- gGUGG-CGGCgGUCaAGGGCGUgccCGCg -3'
miRNA:   3'- -UACCaGCCG-CAGcUCCCGUAaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 16063 0.73 0.362226
Target:  5'- -aGGUCGGCGagccggugaugccacUCGGGGGCGccgUCGg -3'
miRNA:   3'- uaCCAGCCGC---------------AGCUCCCGUaaaAGCg -5'
12927 5' -54.2 NC_003387.1 + 49197 0.73 0.358759
Target:  5'- cUGGggCGGCGgCGGGGGCAcUggCGCc -3'
miRNA:   3'- uACCa-GCCGCaGCUCCCGUaAaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 45235 0.74 0.325376
Target:  5'- cGUGGUCGGaGUCGAuGGGCugga-CGCg -3'
miRNA:   3'- -UACCAGCCgCAGCU-CCCGuaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 34045 0.74 0.30189
Target:  5'- cUGGUCGGCGUguGGGGCGgccuaagCGCc -3'
miRNA:   3'- uACCAGCCGCAgcUCCCGUaaaa---GCG- -5'
12927 5' -54.2 NC_003387.1 + 30685 0.76 0.23309
Target:  5'- -cGGUCGcacCGgCGGGGGCGUUUUCGUg -3'
miRNA:   3'- uaCCAGCc--GCaGCUCCCGUAAAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.