miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12928 3' -59.7 NC_003387.1 + 23344 1.07 0.000433
Target:  5'- uGACCCGCUGCUCACCCGCGAGCAAGUg -3'
miRNA:   3'- -CUGGGCGACGAGUGGGCGCUCGUUCA- -5'
12928 3' -59.7 NC_003387.1 + 49819 0.77 0.074607
Target:  5'- cGCCCGCggccUGCcgCGCCCgGCGAGCGAGUu -3'
miRNA:   3'- cUGGGCG----ACGa-GUGGG-CGCUCGUUCA- -5'
12928 3' -59.7 NC_003387.1 + 5516 0.77 0.081216
Target:  5'- cGAgCaGCgGCUCGCCCGCGAGCGGGc -3'
miRNA:   3'- -CUgGgCGaCGAGUGGGCGCUCGUUCa -5'
12928 3' -59.7 NC_003387.1 + 46705 0.75 0.120117
Target:  5'- cGugCCGCUGgaCGCCaagcagGCGGGCGAGUg -3'
miRNA:   3'- -CugGGCGACgaGUGGg-----CGCUCGUUCA- -5'
12928 3' -59.7 NC_003387.1 + 8026 0.74 0.130465
Target:  5'- cGGCCCGCUGgUgGCCgCGCGAGCc--- -3'
miRNA:   3'- -CUGGGCGACgAgUGG-GCGCUCGuuca -5'
12928 3' -59.7 NC_003387.1 + 9377 0.74 0.134093
Target:  5'- cGugCCGCUcCcgGCCCGCGAGCAGGa -3'
miRNA:   3'- -CugGGCGAcGagUGGGCGCUCGUUCa -5'
12928 3' -59.7 NC_003387.1 + 23303 0.73 0.149958
Target:  5'- cGGgCCGCUGCggcggccuccuccugCGCCCgGCGGGCGAGa -3'
miRNA:   3'- -CUgGGCGACGa--------------GUGGG-CGCUCGUUCa -5'
12928 3' -59.7 NC_003387.1 + 44182 0.71 0.222793
Target:  5'- uGCCCGCgcggGCaacuaacUACCCGCGAGCcGGUc -3'
miRNA:   3'- cUGGGCGa---CGa------GUGGGCGCUCGuUCA- -5'
12928 3' -59.7 NC_003387.1 + 48436 0.7 0.24692
Target:  5'- -gUgCGCUGCUCGCCCGCG-GCc--- -3'
miRNA:   3'- cuGgGCGACGAGUGGGCGCuCGuuca -5'
12928 3' -59.7 NC_003387.1 + 1085 0.7 0.259776
Target:  5'- cGGCUCGCgcauccUGUUCgguGCCCGCGAGCGcgGGUu -3'
miRNA:   3'- -CUGGGCG------ACGAG---UGGGCGCUCGU--UCA- -5'
12928 3' -59.7 NC_003387.1 + 8081 0.7 0.267076
Target:  5'- aACCCGCUGCcggucggcgccaaccCGCCCGaGGGCGAGc -3'
miRNA:   3'- cUGGGCGACGa--------------GUGGGCgCUCGUUCa -5'
12928 3' -59.7 NC_003387.1 + 18178 0.69 0.280075
Target:  5'- cGACCCGCUGacgaUCGgCUGCGAGguGc- -3'
miRNA:   3'- -CUGGGCGACg---AGUgGGCGCUCguUca -5'
12928 3' -59.7 NC_003387.1 + 18222 0.69 0.287116
Target:  5'- cGACCgGCgaccUGgUCGCCCGCGGGUuuGg -3'
miRNA:   3'- -CUGGgCG----ACgAGUGGGCGCUCGuuCa -5'
12928 3' -59.7 NC_003387.1 + 30169 0.69 0.287116
Target:  5'- aGGCCCGC-GCgaUCGCCU-CGGGCAAGg -3'
miRNA:   3'- -CUGGGCGaCG--AGUGGGcGCUCGUUCa -5'
12928 3' -59.7 NC_003387.1 + 18750 0.69 0.294296
Target:  5'- cGACCCGCUGCggcagcucaUACCCGaccccGGCAAGc -3'
miRNA:   3'- -CUGGGCGACGa--------GUGGGCgc---UCGUUCa -5'
12928 3' -59.7 NC_003387.1 + 17053 0.69 0.301615
Target:  5'- uGCCCGCUcaGCcacCGCCCGCGGuCGAGg -3'
miRNA:   3'- cUGGGCGA--CGa--GUGGGCGCUcGUUCa -5'
12928 3' -59.7 NC_003387.1 + 34948 0.69 0.301615
Target:  5'- cGugCCGCUGCgcaaGCUCGCGAuuuacGCGGGc -3'
miRNA:   3'- -CugGGCGACGag--UGGGCGCU-----CGUUCa -5'
12928 3' -59.7 NC_003387.1 + 13542 0.69 0.308322
Target:  5'- gGGCUCGCUGUUCaagggccugggcaGCCCGaucgaCGGGCAGGa -3'
miRNA:   3'- -CUGGGCGACGAG-------------UGGGC-----GCUCGUUCa -5'
12928 3' -59.7 NC_003387.1 + 18287 0.68 0.316673
Target:  5'- aGGCCCgGCUGCgUUugCUGCGcaggaaugccGGCGAGUg -3'
miRNA:   3'- -CUGGG-CGACG-AGugGGCGC----------UCGUUCA- -5'
12928 3' -59.7 NC_003387.1 + 5086 0.68 0.324411
Target:  5'- aGGCCCGCUagucGCggGCCaUGUGGGCGAGg -3'
miRNA:   3'- -CUGGGCGA----CGagUGG-GCGCUCGUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.