miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12928 5' -54.5 NC_003387.1 + 34245 0.66 0.768699
Target:  5'- ---cUCGGGgCGCuCGACcGGCUGAu- -3'
miRNA:   3'- acuaAGCCCaGCG-GCUGcUCGACUug -5'
12928 5' -54.5 NC_003387.1 + 29731 0.66 0.716115
Target:  5'- cGAcgaCGGcagcuaCGCgGGCGAGCUGGACg -3'
miRNA:   3'- aCUaa-GCCca----GCGgCUGCUCGACUUG- -5'
12928 5' -54.5 NC_003387.1 + 41701 0.66 0.716115
Target:  5'- gGcgUCGcGG-CGCCGACGAagGCggccgGGGCa -3'
miRNA:   3'- aCuaAGC-CCaGCGGCUGCU--CGa----CUUG- -5'
12928 5' -54.5 NC_003387.1 + 9394 0.66 0.716115
Target:  5'- cGAggCGGGcaagacgaUCGCCGAgGAG-UGGGCc -3'
miRNA:   3'- aCUaaGCCC--------AGCGGCUgCUCgACUUG- -5'
12928 5' -54.5 NC_003387.1 + 27192 0.66 0.712879
Target:  5'- ---aUCGGGUUGCCGaACGugacaccggcgaucAGCUuGGACu -3'
miRNA:   3'- acuaAGCCCAGCGGC-UGC--------------UCGA-CUUG- -5'
12928 5' -54.5 NC_003387.1 + 3631 0.67 0.709635
Target:  5'- cGGgcgugCGGGuaUCGCCGuCGAccggcucgugccccgGCUGAGCg -3'
miRNA:   3'- aCUaa---GCCC--AGCGGCuGCU---------------CGACUUG- -5'
12928 5' -54.5 NC_003387.1 + 6209 0.67 0.69441
Target:  5'- ---gUUGGugcaGUCGCCGAgCGAGCUgcgGAACa -3'
miRNA:   3'- acuaAGCC----CAGCGGCU-GCUCGA---CUUG- -5'
12928 5' -54.5 NC_003387.1 + 41456 0.67 0.69441
Target:  5'- uUGA-UCGaGUCGCCGACGcGGCcGAAa -3'
miRNA:   3'- -ACUaAGCcCAGCGGCUGC-UCGaCUUg -5'
12928 5' -54.5 NC_003387.1 + 28101 0.67 0.68346
Target:  5'- gUGcgUCGGGUCGCCcaGGCGcGCa---- -3'
miRNA:   3'- -ACuaAGCCCAGCGG--CUGCuCGacuug -5'
12928 5' -54.5 NC_003387.1 + 37235 0.67 0.68346
Target:  5'- ----gUGGG-CGacgauuUCGACGAGCUGAACg -3'
miRNA:   3'- acuaaGCCCaGC------GGCUGCUCGACUUG- -5'
12928 5' -54.5 NC_003387.1 + 45451 0.67 0.672461
Target:  5'- ----cCGGGccugCGCCGugGAGCcagguuagGAGCg -3'
miRNA:   3'- acuaaGCCCa---GCGGCugCUCGa-------CUUG- -5'
12928 5' -54.5 NC_003387.1 + 26687 0.68 0.639274
Target:  5'- cGAUgugCGGcGcCGUCGGCGGGUUGGugGCg -3'
miRNA:   3'- aCUAa--GCC-CaGCGGCUGCUCGACU--UG- -5'
12928 5' -54.5 NC_003387.1 + 13844 0.68 0.621531
Target:  5'- cGGUUCGGcgcGUCuagcuaacgGCCGGCGAGCcgccgauucaugccuUGAGCu -3'
miRNA:   3'- aCUAAGCC---CAG---------CGGCUGCUCG---------------ACUUG- -5'
12928 5' -54.5 NC_003387.1 + 15024 0.68 0.617098
Target:  5'- cGggUCGGcGUCGuCCGACaGGCccagGAACg -3'
miRNA:   3'- aCuaAGCC-CAGC-GGCUGcUCGa---CUUG- -5'
12928 5' -54.5 NC_003387.1 + 46075 0.68 0.606025
Target:  5'- uUGAg-CGGGUCGaCGACGAGCccaaGACg -3'
miRNA:   3'- -ACUaaGCCCAGCgGCUGCUCGac--UUG- -5'
12928 5' -54.5 NC_003387.1 + 21499 0.68 0.606025
Target:  5'- cUGGUUCGuGUCGCUGcACGAGCcGGccGCu -3'
miRNA:   3'- -ACUAAGCcCAGCGGC-UGCUCGaCU--UG- -5'
12928 5' -54.5 NC_003387.1 + 1419 0.69 0.583958
Target:  5'- cGAggCGccGcCGCCGACGAGCUGGc- -3'
miRNA:   3'- aCUaaGCc-CaGCGGCUGCUCGACUug -5'
12928 5' -54.5 NC_003387.1 + 10791 0.69 0.572981
Target:  5'- ---gUCGGGUCGUCGGCGucGGCgGcACa -3'
miRNA:   3'- acuaAGCCCAGCGGCUGC--UCGaCuUG- -5'
12928 5' -54.5 NC_003387.1 + 37554 0.69 0.572981
Target:  5'- cGAUc---GUCGCCGACGGGCUGcuCa -3'
miRNA:   3'- aCUAagccCAGCGGCUGCUCGACuuG- -5'
12928 5' -54.5 NC_003387.1 + 46761 0.69 0.571886
Target:  5'- ----cCGGGUCGagcgacucgcgguUCGGCGAGCUGAu- -3'
miRNA:   3'- acuaaGCCCAGC-------------GGCUGCUCGACUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.