miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12929 3' -59.1 NC_003387.1 + 7478 0.67 0.482694
Target:  5'- -uCCAGCCGCGUccagcccauCGACUCCGAccacgccacgAUCGg -3'
miRNA:   3'- ccGGUUGGCGCG---------GCUGGGGCU----------UAGCa -5'
12929 3' -59.1 NC_003387.1 + 24565 0.67 0.482694
Target:  5'- cGGCgAGCCGagcugGCCGGgCUCG-AUCGUg -3'
miRNA:   3'- -CCGgUUGGCg----CGGCUgGGGCuUAGCA- -5'
12929 3' -59.1 NC_003387.1 + 23026 0.67 0.482694
Target:  5'- cGCCGAgCGCcUCGACCUCGGccacGUCGa -3'
miRNA:   3'- cCGGUUgGCGcGGCUGGGGCU----UAGCa -5'
12929 3' -59.1 NC_003387.1 + 11814 0.67 0.482694
Target:  5'- aGGCCAccgcccgaGCCGCGaucgCGGCCuuGAuuagGUCGc -3'
miRNA:   3'- -CCGGU--------UGGCGCg---GCUGGggCU----UAGCa -5'
12929 3' -59.1 NC_003387.1 + 23830 0.67 0.463143
Target:  5'- uGGCCcggcgcCCGCGCCuaaGCCgCCGcAGUCGg -3'
miRNA:   3'- -CCGGuu----GGCGCGGc--UGG-GGC-UUAGCa -5'
12929 3' -59.1 NC_003387.1 + 10333 0.67 0.463143
Target:  5'- -aUCAGCCGCggcgucgauacgGCCGACCCCGGuaaGg -3'
miRNA:   3'- ccGGUUGGCG------------CGGCUGGGGCUuagCa -5'
12929 3' -59.1 NC_003387.1 + 42456 0.67 0.463143
Target:  5'- aGGCCGAgUGCGCCgcGACCaaCCGGG-CGa -3'
miRNA:   3'- -CCGGUUgGCGCGG--CUGG--GGCUUaGCa -5'
12929 3' -59.1 NC_003387.1 + 20106 0.67 0.463143
Target:  5'- gGGUCAGcgcccCCGCGgCGAgCCCGAgcaggAUCGa -3'
miRNA:   3'- -CCGGUU-----GGCGCgGCUgGGGCU-----UAGCa -5'
12929 3' -59.1 NC_003387.1 + 47166 0.67 0.463143
Target:  5'- gGGC--ACCGCGgUGGCCCUGGugGUCGc -3'
miRNA:   3'- -CCGguUGGCGCgGCUGGGGCU--UAGCa -5'
12929 3' -59.1 NC_003387.1 + 18342 0.67 0.462176
Target:  5'- cGCCGuuuccguugucGCCGUuggguuuGCCGACCUCGAccacGUCGa -3'
miRNA:   3'- cCGGU-----------UGGCG-------CGGCUGGGGCU----UAGCa -5'
12929 3' -59.1 NC_003387.1 + 37880 0.67 0.462176
Target:  5'- uGCUugaacuuGACCGCGUCaACCCCGAGggCGa -3'
miRNA:   3'- cCGG-------UUGGCGCGGcUGGGGCUUa-GCa -5'
12929 3' -59.1 NC_003387.1 + 42056 0.67 0.453523
Target:  5'- cGGCCGuggucgcaGCCGCGUCGAggCCGAAcgcCGUa -3'
miRNA:   3'- -CCGGU--------UGGCGCGGCUggGGCUUa--GCA- -5'
12929 3' -59.1 NC_003387.1 + 42678 0.67 0.453523
Target:  5'- cGGCCGacACCGCGCCcucggcgcGCUUCGGcUCGUc -3'
miRNA:   3'- -CCGGU--UGGCGCGGc-------UGGGGCUuAGCA- -5'
12929 3' -59.1 NC_003387.1 + 18289 0.67 0.453523
Target:  5'- -cUCGACCaGCGCCGACCCgGccgCGg -3'
miRNA:   3'- ccGGUUGG-CGCGGCUGGGgCuuaGCa -5'
12929 3' -59.1 NC_003387.1 + 24764 0.67 0.453523
Target:  5'- cGGCCaAGCCGagcaCGCCGagcGCCCCGAc-CGa -3'
miRNA:   3'- -CCGG-UUGGC----GCGGC---UGGGGCUuaGCa -5'
12929 3' -59.1 NC_003387.1 + 18679 0.67 0.453523
Target:  5'- aGGCCGcCCcacaCGCCGACCaggugCGggUCGc -3'
miRNA:   3'- -CCGGUuGGc---GCGGCUGGg----GCuuAGCa -5'
12929 3' -59.1 NC_003387.1 + 42430 0.67 0.453523
Target:  5'- uGGCCug-CGCGCUGAgCgCCCGAgguGUCGa -3'
miRNA:   3'- -CCGGuugGCGCGGCU-G-GGGCU---UAGCa -5'
12929 3' -59.1 NC_003387.1 + 38956 0.67 0.452567
Target:  5'- gGGuCCAuACCGa-CCGGCCCCGAaauguugAUCGa -3'
miRNA:   3'- -CC-GGU-UGGCgcGGCUGGGGCU-------UAGCa -5'
12929 3' -59.1 NC_003387.1 + 41751 0.67 0.444014
Target:  5'- cGGCUGGCCGCGguguggugCGACCUCGAcGUCa- -3'
miRNA:   3'- -CCGGUUGGCGCg-------GCUGGGGCU-UAGca -5'
12929 3' -59.1 NC_003387.1 + 41915 0.67 0.444014
Target:  5'- cGCCAGCuCGUGCCGuguGCCgCCGAcgCc- -3'
miRNA:   3'- cCGGUUG-GCGCGGC---UGG-GGCUuaGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.