Results 21 - 40 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12929 | 5' | -52.5 | NC_003387.1 | + | 7916 | 0.66 | 0.873256 |
Target: 5'- cGCACGugUggcCGaAGUCGAguGCGGCgaucaaGGCCg -3' miRNA: 3'- -CGUGCugA---GCcUUAGCU--UGCUG------CCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 29442 | 0.66 | 0.873256 |
Target: 5'- cGCGCGGucgcuaucCUCGcGAUCGAgaACGGC-GCCa -3' miRNA: 3'- -CGUGCU--------GAGCcUUAGCU--UGCUGcCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 1540 | 0.66 | 0.873256 |
Target: 5'- gGCACGACcuguucgaccUCGGcccCGAG-GACGGCg -3' miRNA: 3'- -CGUGCUG----------AGCCuuaGCUUgCUGCCGg -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 37155 | 0.66 | 0.873256 |
Target: 5'- cGCugGGCgggcgcaUGGucacCGAGCuGGCGGCCc -3' miRNA: 3'- -CGugCUGa------GCCuua-GCUUG-CUGCCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 19475 | 0.66 | 0.873256 |
Target: 5'- gGCAgGACgUCG---UCGAGCacguacgucuuGACGGCCa -3' miRNA: 3'- -CGUgCUG-AGCcuuAGCUUG-----------CUGCCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 24725 | 0.66 | 0.873256 |
Target: 5'- aGCGCGuGCUCGccgaAAUCGAgggcgccgcaACGGCaccGGCCa -3' miRNA: 3'- -CGUGC-UGAGCc---UUAGCU----------UGCUG---CCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 5214 | 0.66 | 0.873256 |
Target: 5'- uGCAUGaACUgCGGGgugAUCGggUGAaccgcgacccgcUGGCCg -3' miRNA: 3'- -CGUGC-UGA-GCCU---UAGCuuGCU------------GCCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 52198 | 0.66 | 0.873256 |
Target: 5'- gGCAgGuguCUCGGGAUCuucAACcGCGGUCg -3' miRNA: 3'- -CGUgCu--GAGCCUUAGc--UUGcUGCCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 20896 | 0.66 | 0.865291 |
Target: 5'- -gGCGGCgucaUUGGAGgaugCGAuCGGCGGCg -3' miRNA: 3'- cgUGCUG----AGCCUUa---GCUuGCUGCCGg -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 21644 | 0.66 | 0.865291 |
Target: 5'- -aGCGucaGCUCG---UCGAccgcgGCGGCGGCCg -3' miRNA: 3'- cgUGC---UGAGCcuuAGCU-----UGCUGCCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 7822 | 0.66 | 0.865291 |
Target: 5'- aCGCGAUaCGGAuaugcgCGccCGGCGGCUg -3' miRNA: 3'- cGUGCUGaGCCUua----GCuuGCUGCCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 46256 | 0.66 | 0.865291 |
Target: 5'- cGCGcCGACaaugUCGGAcUCGuugGCGACGccGCCc -3' miRNA: 3'- -CGU-GCUG----AGCCUuAGCu--UGCUGC--CGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 35493 | 0.66 | 0.865291 |
Target: 5'- cCACGGCgugCGcucGUCGAGCGGuguaucugccuCGGCCu -3' miRNA: 3'- cGUGCUGa--GCcu-UAGCUUGCU-----------GCCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 36784 | 0.66 | 0.865291 |
Target: 5'- gGCGCGAgUCGGc--CG---GGCGGCCu -3' miRNA: 3'- -CGUGCUgAGCCuuaGCuugCUGCCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 13680 | 0.66 | 0.865291 |
Target: 5'- aGCACGAgUCG---UCGAcCGGCcGCCa -3' miRNA: 3'- -CGUGCUgAGCcuuAGCUuGCUGcCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 15927 | 0.66 | 0.865291 |
Target: 5'- aGCACGuCgCGGuggCGugcGCGuCGGCCa -3' miRNA: 3'- -CGUGCuGaGCCuuaGCu--UGCuGCCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 15639 | 0.66 | 0.864481 |
Target: 5'- cGCACGGCgaggucgaccaugUCGG---CGAACGAauGCCc -3' miRNA: 3'- -CGUGCUG-------------AGCCuuaGCUUGCUgcCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 27465 | 0.66 | 0.862853 |
Target: 5'- cGCGCGACgucggcCGGAuagccgguccacauGUCGGcCGAgGuGCCg -3' miRNA: 3'- -CGUGCUGa-----GCCU--------------UAGCUuGCUgC-CGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 4489 | 0.67 | 0.860394 |
Target: 5'- gGC-CGAC-CGGGcgCGAcACGAucgugcgggucaccuCGGCCg -3' miRNA: 3'- -CGuGCUGaGCCUuaGCU-UGCU---------------GCCGG- -5' |
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12929 | 5' | -52.5 | NC_003387.1 | + | 8427 | 0.67 | 0.857081 |
Target: 5'- cGCGCGA---GGuAAUCGAgagacACGGCGaGCCa -3' miRNA: 3'- -CGUGCUgagCC-UUAGCU-----UGCUGC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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