miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12932 3' -56.6 NC_003387.1 + 6970 0.66 0.649828
Target:  5'- ----cCACAGCG-CGCCCuCGGCc--- -3'
miRNA:   3'- aguaaGUGUCGCaGCGGG-GCCGcuag -5'
12932 3' -56.6 NC_003387.1 + 32478 0.66 0.649828
Target:  5'- gCGUUU---GCGUCGaCCCCGGCGc-- -3'
miRNA:   3'- aGUAAGuguCGCAGC-GGGGCCGCuag -5'
12932 3' -56.6 NC_003387.1 + 11381 0.66 0.638877
Target:  5'- gUCGUUUGCGGCGaucggCGCCacgCUGGCcgcGAUCg -3'
miRNA:   3'- -AGUAAGUGUCGCa----GCGG---GGCCG---CUAG- -5'
12932 3' -56.6 NC_003387.1 + 20607 0.66 0.638877
Target:  5'- aUCGUUCGCugucgaguucuGUGUCGaaaCCGGCGggCa -3'
miRNA:   3'- -AGUAAGUGu----------CGCAGCgg-GGCCGCuaG- -5'
12932 3' -56.6 NC_003387.1 + 12161 0.66 0.638877
Target:  5'- --cUUCuGCAGCGccucgaaCGCCUCGGgGGUCa -3'
miRNA:   3'- aguAAG-UGUCGCa------GCGGGGCCgCUAG- -5'
12932 3' -56.6 NC_003387.1 + 22649 0.66 0.638877
Target:  5'- -----uGCAuGC-UCGCCCCGGCGGccgUCa -3'
miRNA:   3'- aguaagUGU-CGcAGCGGGGCCGCU---AG- -5'
12932 3' -56.6 NC_003387.1 + 2286 0.66 0.638877
Target:  5'- gUCGUccUCGCuGGCGUaCGCCgaGGCGAc- -3'
miRNA:   3'- -AGUA--AGUG-UCGCA-GCGGggCCGCUag -5'
12932 3' -56.6 NC_003387.1 + 10670 0.66 0.638877
Target:  5'- gUCGUaCACGccGCGgucgaucuuggCGCCCUGGCGcUCg -3'
miRNA:   3'- -AGUAaGUGU--CGCa----------GCGGGGCCGCuAG- -5'
12932 3' -56.6 NC_003387.1 + 633 0.66 0.638877
Target:  5'- -----gGCAGCGUCGCCgCCGcggcaGCGAc- -3'
miRNA:   3'- aguaagUGUCGCAGCGG-GGC-----CGCUag -5'
12932 3' -56.6 NC_003387.1 + 48138 0.66 0.638877
Target:  5'- gCGUUCG-AGCuuGUCgGCCUCGGCGAg- -3'
miRNA:   3'- aGUAAGUgUCG--CAG-CGGGGCCGCUag -5'
12932 3' -56.6 NC_003387.1 + 33241 0.66 0.638877
Target:  5'- ----cCACA-CGUCGCCCgCGGUGGccUCg -3'
miRNA:   3'- aguaaGUGUcGCAGCGGG-GCCGCU--AG- -5'
12932 3' -56.6 NC_003387.1 + 18554 0.66 0.637782
Target:  5'- gUCGUUCgagcgcaaggccgAgGGCGaCGCCCUGGUGcUCg -3'
miRNA:   3'- -AGUAAG-------------UgUCGCaGCGGGGCCGCuAG- -5'
12932 3' -56.6 NC_003387.1 + 50416 0.66 0.627921
Target:  5'- gUCGggCgGCAGauCGUCGCCUCGGCGu-- -3'
miRNA:   3'- -AGUaaG-UGUC--GCAGCGGGGCCGCuag -5'
12932 3' -56.6 NC_003387.1 + 2538 0.66 0.627921
Target:  5'- -uGUUcCGCAcGCgGUCGCCgCGGCaGAUCc -3'
miRNA:   3'- agUAA-GUGU-CG-CAGCGGgGCCG-CUAG- -5'
12932 3' -56.6 NC_003387.1 + 33467 0.66 0.627921
Target:  5'- -----gGCGGCcgaaGUCGCCgaGGCGGUCg -3'
miRNA:   3'- aguaagUGUCG----CAGCGGggCCGCUAG- -5'
12932 3' -56.6 NC_003387.1 + 19243 0.66 0.627921
Target:  5'- ---aUCGCgGGCGccgacCGCCUCGGCGAcuUCg -3'
miRNA:   3'- aguaAGUG-UCGCa----GCGGGGCCGCU--AG- -5'
12932 3' -56.6 NC_003387.1 + 14940 0.66 0.627921
Target:  5'- ----gCGCAGCGgCGCaucCCCGGUGGUa -3'
miRNA:   3'- aguaaGUGUCGCaGCG---GGGCCGCUAg -5'
12932 3' -56.6 NC_003387.1 + 6894 0.66 0.627921
Target:  5'- ----cCGCGGCGUCGUCgCgGGCcAUCa -3'
miRNA:   3'- aguaaGUGUCGCAGCGG-GgCCGcUAG- -5'
12932 3' -56.6 NC_003387.1 + 42952 0.66 0.616968
Target:  5'- gCGcUCGCcaAGUGcCGCCCCGGCa--- -3'
miRNA:   3'- aGUaAGUG--UCGCaGCGGGGCCGcuag -5'
12932 3' -56.6 NC_003387.1 + 22346 0.66 0.616968
Target:  5'- gUCGUgaugCGCAGCGa-GCUgCaGGCGGUCg -3'
miRNA:   3'- -AGUAa---GUGUCGCagCGGgG-CCGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.