Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12932 | 3' | -56.6 | NC_003387.1 | + | 6970 | 0.66 | 0.649828 |
Target: 5'- ----cCACAGCG-CGCCCuCGGCc--- -3' miRNA: 3'- aguaaGUGUCGCaGCGGG-GCCGcuag -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 41249 | 0.66 | 0.61259 |
Target: 5'- gCAUUguCGGCcaugaacuugagCGCCCCGGCGGc- -3' miRNA: 3'- aGUAAguGUCGca----------GCGGGGCCGCUag -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 40109 | 0.66 | 0.616968 |
Target: 5'- ---cUCGCAGgCGgCGgCCCGGCG-UCg -3' miRNA: 3'- aguaAGUGUC-GCaGCgGGGCCGCuAG- -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 32478 | 0.66 | 0.649828 |
Target: 5'- gCGUUU---GCGUCGaCCCCGGCGc-- -3' miRNA: 3'- aGUAAGuguCGCAGC-GGGGCCGCuag -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 42952 | 0.66 | 0.616968 |
Target: 5'- gCGcUCGCcaAGUGcCGCCCCGGCa--- -3' miRNA: 3'- aGUaAGUG--UCGCaGCGGGGCCGcuag -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 14940 | 0.66 | 0.627921 |
Target: 5'- ----gCGCAGCGgCGCaucCCCGGUGGUa -3' miRNA: 3'- aguaaGUGUCGCaGCG---GGGCCGCUAg -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 50416 | 0.66 | 0.627921 |
Target: 5'- gUCGggCgGCAGauCGUCGCCUCGGCGu-- -3' miRNA: 3'- -AGUaaG-UGUC--GCAGCGGGGCCGCuag -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 2538 | 0.66 | 0.627921 |
Target: 5'- -uGUUcCGCAcGCgGUCGCCgCGGCaGAUCc -3' miRNA: 3'- agUAA-GUGU-CG-CAGCGGgGCCG-CUAG- -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 48142 | 0.66 | 0.595111 |
Target: 5'- cCGcgCGCAGCG-CGCcaccgaggCCCGcGCGGUCg -3' miRNA: 3'- aGUaaGUGUCGCaGCG--------GGGC-CGCUAG- -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 26481 | 0.66 | 0.616968 |
Target: 5'- cCAUcagCACGGCGaUCGCCggGGCGAc- -3' miRNA: 3'- aGUAa--GUGUCGC-AGCGGggCCGCUag -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 18218 | 0.66 | 0.616968 |
Target: 5'- ---aUCGCGGCGcCGCagCGGCGggCg -3' miRNA: 3'- aguaAGUGUCGCaGCGggGCCGCuaG- -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 22346 | 0.66 | 0.616968 |
Target: 5'- gUCGUgaugCGCAGCGa-GCUgCaGGCGGUCg -3' miRNA: 3'- -AGUAa---GUGUCGCagCGGgG-CCGCUAG- -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 10670 | 0.66 | 0.638877 |
Target: 5'- gUCGUaCACGccGCGgucgaucuuggCGCCCUGGCGcUCg -3' miRNA: 3'- -AGUAaGUGU--CGCa----------GCGGGGCCGCuAG- -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 48138 | 0.66 | 0.638877 |
Target: 5'- gCGUUCG-AGCuuGUCgGCCUCGGCGAg- -3' miRNA: 3'- aGUAAGUgUCG--CAG-CGGGGCCGCUag -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 33241 | 0.66 | 0.638877 |
Target: 5'- ----cCACA-CGUCGCCCgCGGUGGccUCg -3' miRNA: 3'- aguaaGUGUcGCAGCGGG-GCCGCU--AG- -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 2286 | 0.66 | 0.638877 |
Target: 5'- gUCGUccUCGCuGGCGUaCGCCgaGGCGAc- -3' miRNA: 3'- -AGUA--AGUG-UCGCA-GCGGggCCGCUag -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 22649 | 0.66 | 0.638877 |
Target: 5'- -----uGCAuGC-UCGCCCCGGCGGccgUCa -3' miRNA: 3'- aguaagUGU-CGcAGCGGGGCCGCU---AG- -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 12161 | 0.66 | 0.638877 |
Target: 5'- --cUUCuGCAGCGccucgaaCGCCUCGGgGGUCa -3' miRNA: 3'- aguAAG-UGUCGCa------GCGGGGCCgCUAG- -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 19243 | 0.66 | 0.627921 |
Target: 5'- ---aUCGCgGGCGccgacCGCCUCGGCGAcuUCg -3' miRNA: 3'- aguaAGUG-UCGCa----GCGGGGCCGCU--AG- -5' |
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12932 | 3' | -56.6 | NC_003387.1 | + | 6894 | 0.66 | 0.627921 |
Target: 5'- ----cCGCGGCGUCGUCgCgGGCcAUCa -3' miRNA: 3'- aguaaGUGUCGCAGCGG-GgCCGcUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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