miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12932 5' -58.4 NC_003387.1 + 328 0.66 0.517174
Target:  5'- gGUGGUCGGCcUGGuaGUcgauugGCUCG-CCGc -3'
miRNA:   3'- -UACCAGUCGuACCcgCA------CGAGCuGGC- -5'
12932 5' -58.4 NC_003387.1 + 41780 0.66 0.496469
Target:  5'- --cGUCaAGCcgGGcGCGUGCcgCGACCu -3'
miRNA:   3'- uacCAG-UCGuaCC-CGCACGa-GCUGGc -5'
12932 5' -58.4 NC_003387.1 + 50255 0.66 0.496469
Target:  5'- --cGUCAGCGccGGGCgGUGCaccUCGGCCu -3'
miRNA:   3'- uacCAGUCGUa-CCCG-CACG---AGCUGGc -5'
12932 5' -58.4 NC_003387.1 + 5696 0.66 0.494419
Target:  5'- gGUGG-CGGCGgucaaGGGCGUGCccgcgucgucgcUGACCGg -3'
miRNA:   3'- -UACCaGUCGUa----CCCGCACGa-----------GCUGGC- -5'
12932 5' -58.4 NC_003387.1 + 31730 0.66 0.486257
Target:  5'- -aGGUCgcaGGCGaguuagGGGUGUcccuGCUCGACCu -3'
miRNA:   3'- uaCCAG---UCGUa-----CCCGCA----CGAGCUGGc -5'
12932 5' -58.4 NC_003387.1 + 1519 0.67 0.46614
Target:  5'- -cGGUCgugaAGUcgGGGCGguggcacgaccUGUUCGACCu -3'
miRNA:   3'- uaCCAG----UCGuaCCCGC-----------ACGAGCUGGc -5'
12932 5' -58.4 NC_003387.1 + 48226 0.67 0.456244
Target:  5'- -cGGUCgAGCG-GGGCcuccgcggGCUCGGCCu -3'
miRNA:   3'- uaCCAG-UCGUaCCCGca------CGAGCUGGc -5'
12932 5' -58.4 NC_003387.1 + 44318 0.67 0.456244
Target:  5'- -cGGUUAGCuacggcGGGCGgGCUUgaGGCCGa -3'
miRNA:   3'- uaCCAGUCGua----CCCGCaCGAG--CUGGC- -5'
12932 5' -58.4 NC_003387.1 + 3617 0.67 0.446463
Target:  5'- cUGGcCgAGCugagcGGGCGUGCggguaucgccgUCGACCGg -3'
miRNA:   3'- uACCaG-UCGua---CCCGCACG-----------AGCUGGC- -5'
12932 5' -58.4 NC_003387.1 + 10126 0.67 0.436799
Target:  5'- -gGGUCAcc--GGGCGggGCUCGGCCu -3'
miRNA:   3'- uaCCAGUcguaCCCGCa-CGAGCUGGc -5'
12932 5' -58.4 NC_003387.1 + 31042 0.67 0.427257
Target:  5'- -aGG-CGGCcaGGGCGUcggcgaacacguGCUCGGCCGc -3'
miRNA:   3'- uaCCaGUCGuaCCCGCA------------CGAGCUGGC- -5'
12932 5' -58.4 NC_003387.1 + 10929 0.68 0.40855
Target:  5'- cAUGGUCGcGCA-GGGCGcGgUCGACUc -3'
miRNA:   3'- -UACCAGU-CGUaCCCGCaCgAGCUGGc -5'
12932 5' -58.4 NC_003387.1 + 24814 0.68 0.38768
Target:  5'- cUGGcgcagcagcUCGGCGUacucGGGCGgcuggccgggcuccUGCUCGACCGc -3'
miRNA:   3'- uACC---------AGUCGUA----CCCGC--------------ACGAGCUGGC- -5'
12932 5' -58.4 NC_003387.1 + 44038 0.69 0.339073
Target:  5'- -cGGUCGGCAgcGGCGUGC-CGAaCGg -3'
miRNA:   3'- uaCCAGUCGUacCCGCACGaGCUgGC- -5'
12932 5' -58.4 NC_003387.1 + 27950 0.7 0.278581
Target:  5'- -cGGUCggGGCGcucGGCGUGCUCGGCUu -3'
miRNA:   3'- uaCCAG--UCGUac-CCGCACGAGCUGGc -5'
12932 5' -58.4 NC_003387.1 + 31017 0.71 0.245329
Target:  5'- -aGGUCGGCGcGGGcCGcGCUCG-CCGa -3'
miRNA:   3'- uaCCAGUCGUaCCC-GCaCGAGCuGGC- -5'
12932 5' -58.4 NC_003387.1 + 17518 0.72 0.209848
Target:  5'- -cGGcCAGCAUGcgcaGCG-GCUCGGCCGg -3'
miRNA:   3'- uaCCaGUCGUACc---CGCaCGAGCUGGC- -5'
12932 5' -58.4 NC_003387.1 + 22265 0.75 0.136225
Target:  5'- uUGGUgcaCAGCA-GGGCGccgUGCUCGGCCa -3'
miRNA:   3'- uACCA---GUCGUaCCCGC---ACGAGCUGGc -5'
12932 5' -58.4 NC_003387.1 + 44287 0.76 0.118261
Target:  5'- -aGGUCAGC--GGGUGUGCUCGaguuuuuGCCGg -3'
miRNA:   3'- uaCCAGUCGuaCCCGCACGAGC-------UGGC- -5'
12932 5' -58.4 NC_003387.1 + 26261 1.06 0.000698
Target:  5'- gAUGGUCAGCAUGGGCGUGCUCGACCGc -3'
miRNA:   3'- -UACCAGUCGUACCCGCACGAGCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.