Results 1 - 20 of 20 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 26261 | 1.06 | 0.000698 |
Target: 5'- gAUGGUCAGCAUGGGCGUGCUCGACCGc -3' miRNA: 3'- -UACCAGUCGUACCCGCACGAGCUGGC- -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 44287 | 0.76 | 0.118261 |
Target: 5'- -aGGUCAGC--GGGUGUGCUCGaguuuuuGCCGg -3' miRNA: 3'- uaCCAGUCGuaCCCGCACGAGC-------UGGC- -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 22265 | 0.75 | 0.136225 |
Target: 5'- uUGGUgcaCAGCA-GGGCGccgUGCUCGGCCa -3' miRNA: 3'- uACCA---GUCGUaCCCGC---ACGAGCUGGc -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 17518 | 0.72 | 0.209848 |
Target: 5'- -cGGcCAGCAUGcgcaGCG-GCUCGGCCGg -3' miRNA: 3'- uaCCaGUCGUACc---CGCaCGAGCUGGC- -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 31017 | 0.71 | 0.245329 |
Target: 5'- -aGGUCGGCGcGGGcCGcGCUCG-CCGa -3' miRNA: 3'- uaCCAGUCGUaCCC-GCaCGAGCuGGC- -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 27950 | 0.7 | 0.278581 |
Target: 5'- -cGGUCggGGCGcucGGCGUGCUCGGCUu -3' miRNA: 3'- uaCCAG--UCGUac-CCGCACGAGCUGGc -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 44038 | 0.69 | 0.339073 |
Target: 5'- -cGGUCGGCAgcGGCGUGC-CGAaCGg -3' miRNA: 3'- uaCCAGUCGUacCCGCACGaGCUgGC- -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 24814 | 0.68 | 0.38768 |
Target: 5'- cUGGcgcagcagcUCGGCGUacucGGGCGgcuggccgggcuccUGCUCGACCGc -3' miRNA: 3'- uACC---------AGUCGUA----CCCGC--------------ACGAGCUGGC- -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 10929 | 0.68 | 0.40855 |
Target: 5'- cAUGGUCGcGCA-GGGCGcGgUCGACUc -3' miRNA: 3'- -UACCAGU-CGUaCCCGCaCgAGCUGGc -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 31042 | 0.67 | 0.427257 |
Target: 5'- -aGG-CGGCcaGGGCGUcggcgaacacguGCUCGGCCGc -3' miRNA: 3'- uaCCaGUCGuaCCCGCA------------CGAGCUGGC- -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 10126 | 0.67 | 0.436799 |
Target: 5'- -gGGUCAcc--GGGCGggGCUCGGCCu -3' miRNA: 3'- uaCCAGUcguaCCCGCa-CGAGCUGGc -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 3617 | 0.67 | 0.446463 |
Target: 5'- cUGGcCgAGCugagcGGGCGUGCggguaucgccgUCGACCGg -3' miRNA: 3'- uACCaG-UCGua---CCCGCACG-----------AGCUGGC- -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 48226 | 0.67 | 0.456244 |
Target: 5'- -cGGUCgAGCG-GGGCcuccgcggGCUCGGCCu -3' miRNA: 3'- uaCCAG-UCGUaCCCGca------CGAGCUGGc -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 44318 | 0.67 | 0.456244 |
Target: 5'- -cGGUUAGCuacggcGGGCGgGCUUgaGGCCGa -3' miRNA: 3'- uaCCAGUCGua----CCCGCaCGAG--CUGGC- -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 1519 | 0.67 | 0.46614 |
Target: 5'- -cGGUCgugaAGUcgGGGCGguggcacgaccUGUUCGACCu -3' miRNA: 3'- uaCCAG----UCGuaCCCGC-----------ACGAGCUGGc -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 31730 | 0.66 | 0.486257 |
Target: 5'- -aGGUCgcaGGCGaguuagGGGUGUcccuGCUCGACCu -3' miRNA: 3'- uaCCAG---UCGUa-----CCCGCA----CGAGCUGGc -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 5696 | 0.66 | 0.494419 |
Target: 5'- gGUGG-CGGCGgucaaGGGCGUGCccgcgucgucgcUGACCGg -3' miRNA: 3'- -UACCaGUCGUa----CCCGCACGa-----------GCUGGC- -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 41780 | 0.66 | 0.496469 |
Target: 5'- --cGUCaAGCcgGGcGCGUGCcgCGACCu -3' miRNA: 3'- uacCAG-UCGuaCC-CGCACGa-GCUGGc -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 50255 | 0.66 | 0.496469 |
Target: 5'- --cGUCAGCGccGGGCgGUGCaccUCGGCCu -3' miRNA: 3'- uacCAGUCGUa-CCCG-CACG---AGCUGGc -5' |
|||||||
12932 | 5' | -58.4 | NC_003387.1 | + | 328 | 0.66 | 0.517174 |
Target: 5'- gGUGGUCGGCcUGGuaGUcgauugGCUCG-CCGc -3' miRNA: 3'- -UACCAGUCGuACCcgCA------CGAGCuGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home