miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12933 3' -54 NC_003387.1 + 40128 0.67 0.713738
Target:  5'- cGUCGGGCAAGUucaagGCccaCGGCGACAccgucGGCg -3'
miRNA:   3'- -CAGUCCGUUCG-----UGc--GCUGCUGUa----CUG- -5'
12933 3' -54 NC_003387.1 + 10293 0.67 0.702755
Target:  5'- cUCGGGCGcucAGCGCGCaGGCcagGACGcgGGCa -3'
miRNA:   3'- cAGUCCGU---UCGUGCG-CUG---CUGUa-CUG- -5'
12933 3' -54 NC_003387.1 + 48719 0.67 0.702755
Target:  5'- uGUCGaGCAccguGCGcCGCGACGAgucCAUGACc -3'
miRNA:   3'- -CAGUcCGUu---CGU-GCGCUGCU---GUACUG- -5'
12933 3' -54 NC_003387.1 + 27451 0.67 0.702755
Target:  5'- -aCGGGuCGAgcGCACGCG-CGACGUcGGCc -3'
miRNA:   3'- caGUCC-GUU--CGUGCGCuGCUGUA-CUG- -5'
12933 3' -54 NC_003387.1 + 18433 0.67 0.702755
Target:  5'- cUCGGGCAGccacguGUACGCG-CGcacCGUGACg -3'
miRNA:   3'- cAGUCCGUU------CGUGCGCuGCu--GUACUG- -5'
12933 3' -54 NC_003387.1 + 20212 0.67 0.6917
Target:  5'- -cCGGGCGuGCACGCaGCGGCAg--- -3'
miRNA:   3'- caGUCCGUuCGUGCGcUGCUGUacug -5'
12933 3' -54 NC_003387.1 + 732 0.67 0.685038
Target:  5'- gGUCGGGCAGGUGCGCcagGaugcggucggccaccGCGGCAgcGACg -3'
miRNA:   3'- -CAGUCCGUUCGUGCG---C---------------UGCUGUa-CUG- -5'
12933 3' -54 NC_003387.1 + 3834 0.67 0.669423
Target:  5'- cGUCAGGgcGGCGCGguaGGCGGCGccGACg -3'
miRNA:   3'- -CAGUCCguUCGUGCg--CUGCUGUa-CUG- -5'
12933 3' -54 NC_003387.1 + 37842 0.67 0.680586
Target:  5'- gGUCGGGCAccccuGCGCcCGGCGGCucgccucGACg -3'
miRNA:   3'- -CAGUCCGUu----CGUGcGCUGCUGua-----CUG- -5'
12933 3' -54 NC_003387.1 + 49173 0.68 0.635761
Target:  5'- -gCAGGCGGucgcGCAgGCGGCGGCcgucGACg -3'
miRNA:   3'- caGUCCGUU----CGUgCGCUGCUGua--CUG- -5'
12933 3' -54 NC_003387.1 + 29614 0.68 0.634636
Target:  5'- uGUCGGGUAucAGUcggugcaccgcacGCGCGACGGCGcGAg -3'
miRNA:   3'- -CAGUCCGU--UCG-------------UGCGCUGCUGUaCUg -5'
12933 3' -54 NC_003387.1 + 32613 0.68 0.602065
Target:  5'- cUCGGGCucGC-CGCGGgGGCGcUGACc -3'
miRNA:   3'- cAGUCCGuuCGuGCGCUgCUGU-ACUG- -5'
12933 3' -54 NC_003387.1 + 1802 0.68 0.624518
Target:  5'- gGUCaAGGUgAAGCugaccgGCGCGGcCGAUAUGGCg -3'
miRNA:   3'- -CAG-UCCG-UUCG------UGCGCU-GCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 30206 0.68 0.613283
Target:  5'- --uGGGcCAGGguCGCGGCgGGCAUGAUc -3'
miRNA:   3'- cagUCC-GUUCguGCGCUG-CUGUACUG- -5'
12933 3' -54 NC_003387.1 + 25201 0.68 0.624518
Target:  5'- -aCAGGCAAccuCGCgGCGGCGGCcgGAUc -3'
miRNA:   3'- caGUCCGUUc--GUG-CGCUGCUGuaCUG- -5'
12933 3' -54 NC_003387.1 + 29329 0.68 0.646999
Target:  5'- uGUCGGGCAuguucAGCuCGuCGGCGACccGAa -3'
miRNA:   3'- -CAGUCCGU-----UCGuGC-GCUGCUGuaCUg -5'
12933 3' -54 NC_003387.1 + 26700 0.68 0.646999
Target:  5'- cGUC-GGCGGGUugGUGGCGAUGaacccGACa -3'
miRNA:   3'- -CAGuCCGUUCGugCGCUGCUGUa----CUG- -5'
12933 3' -54 NC_003387.1 + 164 0.69 0.557554
Target:  5'- --uGGGCcuGCugGcCGACGGCAaGACg -3'
miRNA:   3'- cagUCCGuuCGugC-GCUGCUGUaCUG- -5'
12933 3' -54 NC_003387.1 + 3946 0.69 0.567501
Target:  5'- aUCAgcGGCGAGCugGCuGCGccgagcaccgcguGCGUGACg -3'
miRNA:   3'- cAGU--CCGUUCGugCGcUGC-------------UGUACUG- -5'
12933 3' -54 NC_003387.1 + 41294 0.69 0.557554
Target:  5'- -gCGGGCAcgAGCAC-CGACGACA--GCa -3'
miRNA:   3'- caGUCCGU--UCGUGcGCUGCUGUacUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.