miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12933 3' -54 NC_003387.1 + 22010 0.67 0.6917
Target:  5'- aUCAGGCcgugacgcuaGAGCGCgGCGuCGACAuuccgugggcggUGGCg -3'
miRNA:   3'- cAGUCCG----------UUCGUG-CGCuGCUGU------------ACUG- -5'
12933 3' -54 NC_003387.1 + 20212 0.67 0.6917
Target:  5'- -cCGGGCGuGCACGCaGCGGCAg--- -3'
miRNA:   3'- caGUCCGUuCGUGCGcUGCUGUacug -5'
12933 3' -54 NC_003387.1 + 732 0.67 0.685038
Target:  5'- gGUCGGGCAGGUGCGCcagGaugcggucggccaccGCGGCAgcGACg -3'
miRNA:   3'- -CAGUCCGUUCGUGCG---C---------------UGCUGUa-CUG- -5'
12933 3' -54 NC_003387.1 + 41780 0.67 0.680586
Target:  5'- cGUCAaGcCGGGCGCGUGccGCGACcUGGCg -3'
miRNA:   3'- -CAGUcC-GUUCGUGCGC--UGCUGuACUG- -5'
12933 3' -54 NC_003387.1 + 37842 0.67 0.680586
Target:  5'- gGUCGGGCAccccuGCGCcCGGCGGCucgccucGACg -3'
miRNA:   3'- -CAGUCCGUu----CGUGcGCUGCUGua-----CUG- -5'
12933 3' -54 NC_003387.1 + 3834 0.67 0.669423
Target:  5'- cGUCAGGgcGGCGCGguaGGCGGCGccGACg -3'
miRNA:   3'- -CAGUCCguUCGUGCg--CUGCUGUa-CUG- -5'
12933 3' -54 NC_003387.1 + 743 0.67 0.669423
Target:  5'- cGUC-GGU--GCGCGCGACG-UGUGGCg -3'
miRNA:   3'- -CAGuCCGuuCGUGCGCUGCuGUACUG- -5'
12933 3' -54 NC_003387.1 + 46520 0.67 0.658224
Target:  5'- cUC-GGCGAcuGCACcaaCGGCGGCGUGACc -3'
miRNA:   3'- cAGuCCGUU--CGUGc--GCUGCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 802 0.67 0.657102
Target:  5'- cUC-GGCAAGCugauuugcgcgaaGCGCGACGACGgccUGuACg -3'
miRNA:   3'- cAGuCCGUUCG-------------UGCGCUGCUGU---AC-UG- -5'
12933 3' -54 NC_003387.1 + 29329 0.68 0.646999
Target:  5'- uGUCGGGCAuguucAGCuCGuCGGCGACccGAa -3'
miRNA:   3'- -CAGUCCGU-----UCGuGC-GCUGCUGuaCUg -5'
12933 3' -54 NC_003387.1 + 26700 0.68 0.646999
Target:  5'- cGUC-GGCGGGUugGUGGCGAUGaacccGACa -3'
miRNA:   3'- -CAGuCCGUUCGugCGCUGCUGUa----CUG- -5'
12933 3' -54 NC_003387.1 + 49173 0.68 0.635761
Target:  5'- -gCAGGCGGucgcGCAgGCGGCGGCcgucGACg -3'
miRNA:   3'- caGUCCGUU----CGUgCGCUGCUGua--CUG- -5'
12933 3' -54 NC_003387.1 + 29614 0.68 0.634636
Target:  5'- uGUCGGGUAucAGUcggugcaccgcacGCGCGACGGCGcGAg -3'
miRNA:   3'- -CAGUCCGU--UCG-------------UGCGCUGCUGUaCUg -5'
12933 3' -54 NC_003387.1 + 25201 0.68 0.624518
Target:  5'- -aCAGGCAAccuCGCgGCGGCGGCcgGAUc -3'
miRNA:   3'- caGUCCGUUc--GUG-CGCUGCUGuaCUG- -5'
12933 3' -54 NC_003387.1 + 1802 0.68 0.624518
Target:  5'- gGUCaAGGUgAAGCugaccgGCGCGGcCGAUAUGGCg -3'
miRNA:   3'- -CAG-UCCG-UUCG------UGCGCU-GCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 30206 0.68 0.613283
Target:  5'- --uGGGcCAGGguCGCGGCgGGCAUGAUc -3'
miRNA:   3'- cagUCC-GUUCguGCGCUG-CUGUACUG- -5'
12933 3' -54 NC_003387.1 + 32613 0.68 0.602065
Target:  5'- cUCGGGCucGC-CGCGGgGGCGcUGACc -3'
miRNA:   3'- cAGUCCGuuCGuGCGCUgCUGU-ACUG- -5'
12933 3' -54 NC_003387.1 + 52081 0.69 0.590874
Target:  5'- aUCGGGCGucgcuGC-CGCGGCGGC--GACg -3'
miRNA:   3'- cAGUCCGUu----CGuGCGCUGCUGuaCUG- -5'
12933 3' -54 NC_003387.1 + 28215 0.69 0.590874
Target:  5'- cUC-GGCAAGCGCagccGCGACGGCucGACc -3'
miRNA:   3'- cAGuCCGUUCGUG----CGCUGCUGuaCUG- -5'
12933 3' -54 NC_003387.1 + 34082 0.69 0.590874
Target:  5'- -gCAGGCGGauucGCAaagggGCGuCGGCAUGACg -3'
miRNA:   3'- caGUCCGUU----CGUg----CGCuGCUGUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.