Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12933 | 5' | -62.8 | NC_003387.1 | + | 13331 | 0.68 | 0.233606 |
Target: 5'- uGGGCaagacguucGUGUCGGGCAUGCucgaaagcauUGGcCUCGa -3' miRNA: 3'- -CCCGc--------CACGGCCCGUACG----------ACC-GAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 34977 | 0.68 | 0.233606 |
Target: 5'- cGGGCcuGGUGCCcgucGGCAaGCcgGGUUCGUu -3' miRNA: 3'- -CCCG--CCACGGc---CCGUaCGa-CCGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 6934 | 0.68 | 0.222143 |
Target: 5'- gGGGCGGUuaucgggguGCgugaGGGCAcccUGCUGGCcgcccUCGUc -3' miRNA: 3'- -CCCGCCA---------CGg---CCCGU---ACGACCG-----AGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 10988 | 0.68 | 0.220466 |
Target: 5'- cGGCGGcGCCGcaaaggguaugggcGGCAguuucGUUGGCUCGa -3' miRNA: 3'- cCCGCCaCGGC--------------CCGUa----CGACCGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 35673 | 0.69 | 0.205849 |
Target: 5'- cGGGCGGUGgcugagCGGGCAcgUGUgggGGC-CGUa -3' miRNA: 3'- -CCCGCCACg-----GCCCGU--ACGa--CCGaGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 49591 | 0.7 | 0.180992 |
Target: 5'- cGGGCGGUgGCCuGGCAgugcugccGCUGGCggcccCGa -3' miRNA: 3'- -CCCGCCA-CGGcCCGUa-------CGACCGa----GCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 12440 | 0.7 | 0.180992 |
Target: 5'- aGGGCGcUGCCGaGGUucGCUGGCggCGg -3' miRNA: 3'- -CCCGCcACGGC-CCGuaCGACCGa-GCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 9669 | 0.7 | 0.171817 |
Target: 5'- gGGGCGGUGCgGGGUcaGCUcGCcCGUc -3' miRNA: 3'- -CCCGCCACGgCCCGuaCGAcCGaGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 75 | 0.71 | 0.154704 |
Target: 5'- cGGCGccG-CGGGCGuuUGCUGGCUCGa -3' miRNA: 3'- cCCGCcaCgGCCCGU--ACGACCGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 24837 | 0.71 | 0.150674 |
Target: 5'- cGGGCGGcugGCCGGGCuc-CUG-CUCGa -3' miRNA: 3'- -CCCGCCa--CGGCCCGuacGACcGAGCa -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 30429 | 0.71 | 0.13915 |
Target: 5'- aGGCGGcuUGCCGGGUuUGUUGGCg--- -3' miRNA: 3'- cCCGCC--ACGGCCCGuACGACCGagca -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 22685 | 0.72 | 0.125042 |
Target: 5'- uGGGCGGUGUCGacGGCGgcGCUGGCg--- -3' miRNA: 3'- -CCCGCCACGGC--CCGUa-CGACCGagca -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 30720 | 0.72 | 0.125042 |
Target: 5'- gGGGCGcucaGCCGGGCAgGUgacccGGCUCGUc -3' miRNA: 3'- -CCCGCca--CGGCCCGUaCGa----CCGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 47030 | 0.73 | 0.09802 |
Target: 5'- uGGCGGcccgGCCGGGCAUGaggcgugGcGCUCGUu -3' miRNA: 3'- cCCGCCa---CGGCCCGUACga-----C-CGAGCA- -5' |
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12933 | 5' | -62.8 | NC_003387.1 | + | 26576 | 1.09 | 0.000166 |
Target: 5'- cGGGCGGUGCCGGGCAUGCUGGCUCGUg -3' miRNA: 3'- -CCCGCCACGGCCCGUACGACCGAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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