miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12935 5' -58.2 NC_003387.1 + 25006 0.66 0.557364
Target:  5'- -cCG-GGGGCGGCuGAuaugcAGCGgccUGUCGGg -3'
miRNA:   3'- aaGCgCUCCGCCGcCU-----UCGU---ACAGCC- -5'
12935 5' -58.2 NC_003387.1 + 28200 0.66 0.546754
Target:  5'- cUCGCcaAGGUGGCGGAacgGGC-UG-CGGc -3'
miRNA:   3'- aAGCGc-UCCGCCGCCU---UCGuACaGCC- -5'
12935 5' -58.2 NC_003387.1 + 28450 0.66 0.546754
Target:  5'- -aCGcCGAGGCGGCGGcAGaucg-CGGc -3'
miRNA:   3'- aaGC-GCUCCGCCGCCuUCguacaGCC- -5'
12935 5' -58.2 NC_003387.1 + 31028 0.66 0.525738
Target:  5'- -gCGcCGGGGCGGCGGccAGCAcGgcacCGGc -3'
miRNA:   3'- aaGC-GCUCCGCCGCCu-UCGUaCa---GCC- -5'
12935 5' -58.2 NC_003387.1 + 5827 0.66 0.525738
Target:  5'- -cCGCGcaAGGCGGCGGcGGCcucaaGUCcGGu -3'
miRNA:   3'- aaGCGC--UCCGCCGCCuUCGua---CAG-CC- -5'
12935 5' -58.2 NC_003387.1 + 13934 0.66 0.525738
Target:  5'- -aUGUGAGGCGGUG-AAGCGcgGUCa- -3'
miRNA:   3'- aaGCGCUCCGCCGCcUUCGUa-CAGcc -5'
12935 5' -58.2 NC_003387.1 + 26068 0.67 0.474663
Target:  5'- aUUCGCGAGGCuGCGcccGGCGUGaCGu -3'
miRNA:   3'- -AAGCGCUCCGcCGCcu-UCGUACaGCc -5'
12935 5' -58.2 NC_003387.1 + 35670 0.68 0.445234
Target:  5'- -cCGCG-GGCGGUGGcuGAGCgggcacGUGUgGGg -3'
miRNA:   3'- aaGCGCuCCGCCGCC--UUCG------UACAgCC- -5'
12935 5' -58.2 NC_003387.1 + 27909 0.68 0.442347
Target:  5'- -aCGCGGccuugaccGGCGGCgugggcgccucgggGGggGCucgGUCGGg -3'
miRNA:   3'- aaGCGCU--------CCGCCG--------------CCuuCGua-CAGCC- -5'
12935 5' -58.2 NC_003387.1 + 49197 0.68 0.426192
Target:  5'- -cUGgGGcGGCGGCGGggGCAcUGgcgcCGGu -3'
miRNA:   3'- aaGCgCU-CCGCCGCCuuCGU-ACa---GCC- -5'
12935 5' -58.2 NC_003387.1 + 49180 0.68 0.423377
Target:  5'- gUCGCGcAGGCGGCGGccgucgacguugcuGAGCccGcaaCGGa -3'
miRNA:   3'- aAGCGC-UCCGCCGCC--------------UUCGuaCa--GCC- -5'
12935 5' -58.2 NC_003387.1 + 31035 0.68 0.416854
Target:  5'- cUCGcCGAGGCGGCcaGGGC--GUCGGc -3'
miRNA:   3'- aAGC-GCUCCGCCGccUUCGuaCAGCC- -5'
12935 5' -58.2 NC_003387.1 + 2721 0.68 0.407642
Target:  5'- -aCGCG-GGCGGCGGGcaggccacgcAGCA-GcCGGu -3'
miRNA:   3'- aaGCGCuCCGCCGCCU----------UCGUaCaGCC- -5'
12935 5' -58.2 NC_003387.1 + 33458 0.69 0.389605
Target:  5'- cUCGCGcaAGGCGGCcgaagucgccGAGGCG-GUCGGc -3'
miRNA:   3'- aAGCGC--UCCGCCGc---------CUUCGUaCAGCC- -5'
12935 5' -58.2 NC_003387.1 + 25974 0.69 0.3721
Target:  5'- gUUCGcCGAgguuccGGCGGCGGucaAGGCgauuguguccgGUGUCGGg -3'
miRNA:   3'- -AAGC-GCU------CCGCCGCC---UUCG-----------UACAGCC- -5'
12935 5' -58.2 NC_003387.1 + 48242 0.69 0.346863
Target:  5'- -cCGCGGGcucggccuucGCGGCGGGcucGGCG-GUCGGc -3'
miRNA:   3'- aaGCGCUC----------CGCCGCCU---UCGUaCAGCC- -5'
12935 5' -58.2 NC_003387.1 + 21935 0.71 0.278674
Target:  5'- -gUGCucGGCGGCGGggGCGg--CGGc -3'
miRNA:   3'- aaGCGcuCCGCCGCCuuCGUacaGCC- -5'
12935 5' -58.2 NC_003387.1 + 22164 0.71 0.258444
Target:  5'- -gCGCGuaccggccgcGGCGGCGGuc-CAUGUCGGg -3'
miRNA:   3'- aaGCGCu---------CCGCCGCCuucGUACAGCC- -5'
12935 5' -58.2 NC_003387.1 + 39620 0.72 0.251972
Target:  5'- aUCGcCGAGGUGGCGGcauGAGCcucgacccgGUGUCGc -3'
miRNA:   3'- aAGC-GCUCCGCCGCC---UUCG---------UACAGCc -5'
12935 5' -58.2 NC_003387.1 + 40109 0.72 0.233355
Target:  5'- cUCGC-AGGCGGCGGcccGGC--GUCGGg -3'
miRNA:   3'- aAGCGcUCCGCCGCCu--UCGuaCAGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.