miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12938 3' -50.6 NC_003387.1 + 51088 0.66 0.906442
Target:  5'- --gCCGucgucGUcCAUCAGCCAGCACgCGCc -3'
miRNA:   3'- aaaGGCu----CAcGUAGUUGGUUGUG-GUG- -5'
12938 3' -50.6 NC_003387.1 + 20962 0.66 0.906442
Target:  5'- -aUCCG-G-GCAggggCGGgCAACGCCGCg -3'
miRNA:   3'- aaAGGCuCaCGUa---GUUgGUUGUGGUG- -5'
12938 3' -50.6 NC_003387.1 + 45512 0.66 0.899283
Target:  5'- --gCCGGGUcaGCAccgCGGCCAccauugACGCCACc -3'
miRNA:   3'- aaaGGCUCA--CGUa--GUUGGU------UGUGGUG- -5'
12938 3' -50.6 NC_003387.1 + 42665 0.66 0.899283
Target:  5'- --gCCGccGUGauacCGGCCGACACCGCg -3'
miRNA:   3'- aaaGGCu-CACgua-GUUGGUUGUGGUG- -5'
12938 3' -50.6 NC_003387.1 + 41437 0.66 0.899283
Target:  5'- --cCCGAGgucaccgGCG-CGGCCcuGACGCCGCc -3'
miRNA:   3'- aaaGGCUCa------CGUaGUUGG--UUGUGGUG- -5'
12938 3' -50.6 NC_003387.1 + 32190 0.66 0.891825
Target:  5'- --gCCGAGcugcGCGUCGucaccgacgaGCgCGACGCCGCg -3'
miRNA:   3'- aaaGGCUCa---CGUAGU----------UG-GUUGUGGUG- -5'
12938 3' -50.6 NC_003387.1 + 27841 0.66 0.891825
Target:  5'- --gUCGAGUuCGaCAGCCGcgGCGCCACg -3'
miRNA:   3'- aaaGGCUCAcGUaGUUGGU--UGUGGUG- -5'
12938 3' -50.6 NC_003387.1 + 7842 0.66 0.891825
Target:  5'- --cCCGgcGGcUGCGUCAgcucgGCCAGCACCuuGCg -3'
miRNA:   3'- aaaGGC--UC-ACGUAGU-----UGGUUGUGG--UG- -5'
12938 3' -50.6 NC_003387.1 + 32169 0.66 0.884073
Target:  5'- --aCCGGG-GCGUuaucggcgcagcCGACgAACACCGCa -3'
miRNA:   3'- aaaGGCUCaCGUA------------GUUGgUUGUGGUG- -5'
12938 3' -50.6 NC_003387.1 + 29918 0.66 0.876033
Target:  5'- --gUUGAG-GCAUCAA-CAGCACUACg -3'
miRNA:   3'- aaaGGCUCaCGUAGUUgGUUGUGGUG- -5'
12938 3' -50.6 NC_003387.1 + 39414 0.66 0.876033
Target:  5'- ---gCGAGUGgGUCGaggugACCGgGCGCCGCa -3'
miRNA:   3'- aaagGCUCACgUAGU-----UGGU-UGUGGUG- -5'
12938 3' -50.6 NC_003387.1 + 37135 0.66 0.876033
Target:  5'- -gUCCGAGUGUugcccggcagCAGCCAggcgcgaaucgGCugCACc -3'
miRNA:   3'- aaAGGCUCACGua--------GUUGGU-----------UGugGUG- -5'
12938 3' -50.6 NC_003387.1 + 23027 0.66 0.876033
Target:  5'- --gCCGAGcGCcUCGACCucgGCCACg -3'
miRNA:   3'- aaaGGCUCaCGuAGUUGGuugUGGUG- -5'
12938 3' -50.6 NC_003387.1 + 17071 0.66 0.867711
Target:  5'- --aUCGAGUGgGUCGACguCAACGCCc- -3'
miRNA:   3'- aaaGGCUCACgUAGUUG--GUUGUGGug -5'
12938 3' -50.6 NC_003387.1 + 14283 0.66 0.867711
Target:  5'- --cCCGAGcGCGUCGACUAuaaaaaGCGgCGCa -3'
miRNA:   3'- aaaGGCUCaCGUAGUUGGU------UGUgGUG- -5'
12938 3' -50.6 NC_003387.1 + 37383 0.67 0.859116
Target:  5'- -gUCCGAGcGCAUgAACuCGACgagccagucgucGCCGCg -3'
miRNA:   3'- aaAGGCUCaCGUAgUUG-GUUG------------UGGUG- -5'
12938 3' -50.6 NC_003387.1 + 31112 0.67 0.859116
Target:  5'- --cCCGAucauGUGCAcCAG-CAGCGCCGCg -3'
miRNA:   3'- aaaGGCU----CACGUaGUUgGUUGUGGUG- -5'
12938 3' -50.6 NC_003387.1 + 48400 0.67 0.853831
Target:  5'- --gCCGGGcGCAgccugggCAACCAgugguacagccaccaGCACCGCg -3'
miRNA:   3'- aaaGGCUCaCGUa------GUUGGU---------------UGUGGUG- -5'
12938 3' -50.6 NC_003387.1 + 9488 0.67 0.850256
Target:  5'- --cCCGAGUacgGCGUCAAcgaguaccCCGACGgCACg -3'
miRNA:   3'- aaaGGCUCA---CGUAGUU--------GGUUGUgGUG- -5'
12938 3' -50.6 NC_003387.1 + 49603 0.67 0.841141
Target:  5'- --gCCGGGcugaucUGCG-CGACCAuCGCCACg -3'
miRNA:   3'- aaaGGCUC------ACGUaGUUGGUuGUGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.