Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12938 | 5' | -56.2 | NC_003387.1 | + | 6360 | 0.66 | 0.675065 |
Target: 5'- cCGUGUCGCgc-UUGGCCucGGCcgcGGGCg -3' miRNA: 3'- aGCACAGCGaucGACUGG--CCGa--CUCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 32212 | 0.66 | 0.664136 |
Target: 5'- gCGcaUCGCUAccGCUGuuGCCGGUgucgGAGCg -3' miRNA: 3'- aGCacAGCGAU--CGAC--UGGCCGa---CUCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 27035 | 0.66 | 0.653178 |
Target: 5'- -gGUGuUCGCgaggcGGCgGAagcaugUCGGCUGAGCu -3' miRNA: 3'- agCAC-AGCGa----UCGaCU------GGCCGACUCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 28952 | 0.66 | 0.653178 |
Target: 5'- -aGUGUCGUgUAGCUaaccGCCGGCaaaaacucGAGCg -3' miRNA: 3'- agCACAGCG-AUCGAc---UGGCCGa-------CUCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 49177 | 0.66 | 0.653178 |
Target: 5'- gCG-GUCGCgcaGGCggcGGCCGucgacguuGCUGAGCc -3' miRNA: 3'- aGCaCAGCGa--UCGa--CUGGC--------CGACUCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 2864 | 0.66 | 0.642201 |
Target: 5'- gUCGgugagGUCGCcccGCUGAuCCuGCUGcAGCa -3' miRNA: 3'- -AGCa----CAGCGau-CGACU-GGcCGAC-UCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 8514 | 0.66 | 0.620228 |
Target: 5'- -aGUGUCcCUcgGGCcGACCGGCUcgcGGGUa -3' miRNA: 3'- agCACAGcGA--UCGaCUGGCCGA---CUCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 24860 | 0.66 | 0.620228 |
Target: 5'- gCGUgGUgGCUGGCUcGACCucgggcgguGGCUGcGCc -3' miRNA: 3'- aGCA-CAgCGAUCGA-CUGG---------CCGACuCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 2041 | 0.67 | 0.609253 |
Target: 5'- cCGccGUCGCcgAGCUGGCCGcGgUG-GCg -3' miRNA: 3'- aGCa-CAGCGa-UCGACUGGC-CgACuCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 5719 | 0.67 | 0.596109 |
Target: 5'- cCGcGUCGUc-GCUGACCGGCaagaccgaggacGAGCu -3' miRNA: 3'- aGCaCAGCGauCGACUGGCCGa-----------CUCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 48236 | 0.67 | 0.58737 |
Target: 5'- aUCGUGUCGCgcccGGUcGGCCGcggccagcaGCUcGGGCu -3' miRNA: 3'- -AGCACAGCGa---UCGaCUGGC---------CGA-CUCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 6297 | 0.67 | 0.58737 |
Target: 5'- cCGUGgcCGU--GCUGACCGaggucgccgaGCUGGGCg -3' miRNA: 3'- aGCACa-GCGauCGACUGGC----------CGACUCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 30986 | 0.67 | 0.580831 |
Target: 5'- cCGUGUCGC-AGUUGGggccgaggucaggauCgGGCcGAGCg -3' miRNA: 3'- aGCACAGCGaUCGACU---------------GgCCGaCUCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 6477 | 0.67 | 0.565636 |
Target: 5'- ---cGUCGCUguaGGCguaGAgCGGCUGAGa -3' miRNA: 3'- agcaCAGCGA---UCGa--CUgGCCGACUCg -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 52408 | 0.68 | 0.533456 |
Target: 5'- gCGUGUCGCcgGGCUcgggcuccACCGGCUcGGUc -3' miRNA: 3'- aGCACAGCGa-UCGAc-------UGGCCGAcUCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 13847 | 0.68 | 0.501952 |
Target: 5'- uUCGgcgCGuCUAGCUaacGGCCGGC-GAGCc -3' miRNA: 3'- -AGCacaGC-GAUCGA---CUGGCCGaCUCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 26396 | 0.68 | 0.501952 |
Target: 5'- gUCGgcuacCGCaauGCUGAUCgGGCUGGGCa -3' miRNA: 3'- -AGCaca--GCGau-CGACUGG-CCGACUCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 1263 | 0.69 | 0.491631 |
Target: 5'- -gGUGUCGgUuGCgGugCGGCUGcGCg -3' miRNA: 3'- agCACAGCgAuCGaCugGCCGACuCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 8125 | 0.69 | 0.491631 |
Target: 5'- cUCGUacgCGCU-GCUGucCCGGCcGGGCa -3' miRNA: 3'- -AGCAca-GCGAuCGACu-GGCCGaCUCG- -5' |
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12938 | 5' | -56.2 | NC_003387.1 | + | 3644 | 0.69 | 0.471291 |
Target: 5'- aUCGccGUCGaCcGGCUcGugccCCGGCUGAGCg -3' miRNA: 3'- -AGCa-CAGC-GaUCGA-Cu---GGCCGACUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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