miRNA display CGI


Results 21 - 40 of 329 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12942 3' -54.8 NC_003387.1 + 22389 0.66 0.741027
Target:  5'- gGCCGCCGGgcacCAGGAAaa--AGCGcCGCCa -3'
miRNA:   3'- -UGGCGGCC----GUUUUUgagcUCGC-GUGG- -5'
12942 3' -54.8 NC_003387.1 + 7321 0.66 0.741027
Target:  5'- aACCGUcacgauCGGCucGGGCggcCGGGCGCAgCu -3'
miRNA:   3'- -UGGCG------GCCGuuUUUGa--GCUCGCGUgG- -5'
12942 3' -54.8 NC_003387.1 + 11300 0.66 0.739973
Target:  5'- gACCGgCGGCGAcagcggcAAGCUCG-GCGagauuguCCa -3'
miRNA:   3'- -UGGCgGCCGUU-------UUUGAGCuCGCgu-----GG- -5'
12942 3' -54.8 NC_003387.1 + 7451 0.66 0.736805
Target:  5'- --gGUCGGCGAGAACgcgaugggccaggCGAucaccgagccGCGCACCc -3'
miRNA:   3'- uggCGGCCGUUUUUGa------------GCU----------CGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 30724 0.66 0.730441
Target:  5'- cGCUcaGCCgGGCAGGugacccGGCUCGucgGGCaGCACCg -3'
miRNA:   3'- -UGG--CGG-CCGUUU------UUGAGC---UCG-CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 15942 0.66 0.730441
Target:  5'- gGCCGcCCGGCc--GACUCGcGC-CugCa -3'
miRNA:   3'- -UGGC-GGCCGuuuUUGAGCuCGcGugG- -5'
12942 3' -54.8 NC_003387.1 + 2420 0.66 0.730441
Target:  5'- cCCGCCuGgGAGAugUgGcAGCGCaACCg -3'
miRNA:   3'- uGGCGGcCgUUUUugAgC-UCGCG-UGG- -5'
12942 3' -54.8 NC_003387.1 + 44877 0.66 0.730441
Target:  5'- -gUGCUGGCc-GAGCUgacgcagccgcCGGGCGCGCUa -3'
miRNA:   3'- ugGCGGCCGuuUUUGA-----------GCUCGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 24930 0.66 0.730441
Target:  5'- gACCGCC-GCGAccGACggCGGGC-CGCCu -3'
miRNA:   3'- -UGGCGGcCGUUu-UUGa-GCUCGcGUGG- -5'
12942 3' -54.8 NC_003387.1 + 985 0.66 0.730441
Target:  5'- cGCCGCCgaGGCGccGACcggggUCGGauGCGCugCg -3'
miRNA:   3'- -UGGCGG--CCGUuuUUG-----AGCU--CGCGugG- -5'
12942 3' -54.8 NC_003387.1 + 46045 0.66 0.730441
Target:  5'- aGCUGUCGGCAAucacCUCGAucgccgcgucgGCGUcCCa -3'
miRNA:   3'- -UGGCGGCCGUUuuu-GAGCU-----------CGCGuGG- -5'
12942 3' -54.8 NC_003387.1 + 32103 0.66 0.730441
Target:  5'- cCCGCCGGUuucgacacAGAACUCGAcaGCGaACg -3'
miRNA:   3'- uGGCGGCCGu-------UUUUGAGCU--CGCgUGg -5'
12942 3' -54.8 NC_003387.1 + 24904 0.66 0.730441
Target:  5'- gACCGaCgGGCGGuacuuCUCGucGgGCACCg -3'
miRNA:   3'- -UGGC-GgCCGUUuuu--GAGCu-CgCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 9770 0.66 0.730441
Target:  5'- uGCCGgggCGGCAcuugg-CGAGCGCgACCa -3'
miRNA:   3'- -UGGCg--GCCGUuuuugaGCUCGCG-UGG- -5'
12942 3' -54.8 NC_003387.1 + 7842 0.66 0.730441
Target:  5'- cCCGgCGGCugcgucAGCUCG-GCcaGCACCu -3'
miRNA:   3'- uGGCgGCCGuuu---UUGAGCuCG--CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 45079 0.66 0.730441
Target:  5'- gUCGCCGuGCAccuuGAACUUGcgcccccGCGCAUCg -3'
miRNA:   3'- uGGCGGC-CGUu---UUUGAGCu------CGCGUGG- -5'
12942 3' -54.8 NC_003387.1 + 28039 0.66 0.730441
Target:  5'- uACUGCCGGuCGGGAuaGCgCGAGU-CACCc -3'
miRNA:   3'- -UGGCGGCC-GUUUU--UGaGCUCGcGUGG- -5'
12942 3' -54.8 NC_003387.1 + 32186 0.66 0.726178
Target:  5'- gACCGCCGaGCu---GCgcgucgucaccgaCGAGCGCgacGCCg -3'
miRNA:   3'- -UGGCGGC-CGuuuuUGa------------GCUCGCG---UGG- -5'
12942 3' -54.8 NC_003387.1 + 47969 0.66 0.724041
Target:  5'- cACCGCgagcugggcggcaaCGGCAAAcgguGCuUCGAGCacuucgacgagucgGCGCCg -3'
miRNA:   3'- -UGGCG--------------GCCGUUUu---UG-AGCUCG--------------CGUGG- -5'
12942 3' -54.8 NC_003387.1 + 19510 0.66 0.719755
Target:  5'- cAUCGCCGaGCGGGc-CUCGcgcuuGCGCugCg -3'
miRNA:   3'- -UGGCGGC-CGUUUuuGAGCu----CGCGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.