miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12943 3' -53.1 NC_003387.1 + 48815 0.66 0.856133
Target:  5'- cGUUAgcacCCagGCGGucagggUCGGGcAGCGGCGCc -3'
miRNA:   3'- -CGAUa---GGagCGCU------AGCUC-UUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 25883 0.66 0.856133
Target:  5'- aGCgg-CCUgGUGcuccccggcGUCcAGGGCGGCGCg -3'
miRNA:   3'- -CGauaGGAgCGC---------UAGcUCUUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 15964 0.66 0.856133
Target:  5'- uGCaUGUgCUUGCGGUgGAGGACaauucgGGcCGCa -3'
miRNA:   3'- -CG-AUAgGAGCGCUAgCUCUUG------CC-GCG- -5'
12943 3' -53.1 NC_003387.1 + 17246 0.66 0.856133
Target:  5'- uGCUGUCaCUcaCGCGGucaccUCGcGGACuGCGCg -3'
miRNA:   3'- -CGAUAG-GA--GCGCU-----AGCuCUUGcCGCG- -5'
12943 3' -53.1 NC_003387.1 + 40908 0.66 0.855292
Target:  5'- cGCga---UCGCGGUCGGGcgguggccugaugGACGGCGa -3'
miRNA:   3'- -CGauaggAGCGCUAGCUC-------------UUGCCGCg -5'
12943 3' -53.1 NC_003387.1 + 19153 0.66 0.847618
Target:  5'- gGCUcGUCgaCGCuGUCGAGGgcGCGGCccGCa -3'
miRNA:   3'- -CGA-UAGgaGCGcUAGCUCU--UGCCG--CG- -5'
12943 3' -53.1 NC_003387.1 + 23420 0.66 0.847618
Target:  5'- cGCUcgugCC-CGCGGUCGccggGGAACagGGCGUc -3'
miRNA:   3'- -CGAua--GGaGCGCUAGC----UCUUG--CCGCG- -5'
12943 3' -53.1 NC_003387.1 + 34433 0.66 0.847618
Target:  5'- cGCggccggGUCggCGCuGGUCGAGuaguGCGGCGa -3'
miRNA:   3'- -CGa-----UAGgaGCG-CUAGCUCu---UGCCGCg -5'
12943 3' -53.1 NC_003387.1 + 21576 0.66 0.846754
Target:  5'- aGCUgAUCCUgCaCGAcUCGAuguucucGGGCGGCGCc -3'
miRNA:   3'- -CGA-UAGGA-GcGCU-AGCU-------CUUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 44420 0.66 0.845888
Target:  5'- cGCUGUgCUCGCGAUgcugcccgcCGAcgcgcacgaGGCGCu -3'
miRNA:   3'- -CGAUAgGAGCGCUA---------GCUcuug-----CCGCG- -5'
12943 3' -53.1 NC_003387.1 + 4400 0.66 0.8424
Target:  5'- aCUcgCgCUCGCGcgccgccucgauuucGUCGAGGcggGCGGCGa -3'
miRNA:   3'- cGAuaG-GAGCGC---------------UAGCUCU---UGCCGCg -5'
12943 3' -53.1 NC_003387.1 + 43627 0.66 0.838875
Target:  5'- ----cCCgagCGCGAgcgggUCGAGGGacUGGCGCa -3'
miRNA:   3'- cgauaGGa--GCGCU-----AGCUCUU--GCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 1606 0.66 0.838875
Target:  5'- cGCacggCCUgGCGAUUucGGuCGGCGCg -3'
miRNA:   3'- -CGaua-GGAgCGCUAGcuCUuGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 36205 0.66 0.838875
Target:  5'- uGCUGUggcgCCUCgGCGuaAUCGAGGucgucgcaugaAgGGCGCu -3'
miRNA:   3'- -CGAUA----GGAG-CGC--UAGCUCU-----------UgCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 22675 0.66 0.838875
Target:  5'- gGCg--CgCUCGUGGgcggugUCGAcGGCGGCGCu -3'
miRNA:   3'- -CGauaG-GAGCGCU------AGCUcUUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 26570 0.66 0.838875
Target:  5'- gGUUGacUCCUCGgGGUCaGGccgcgcGAGCGGCGa -3'
miRNA:   3'- -CGAU--AGGAGCgCUAG-CU------CUUGCCGCg -5'
12943 3' -53.1 NC_003387.1 + 10546 0.66 0.829912
Target:  5'- gGCcGUCUgaCGCaGAUCGAcu-CGGCGCa -3'
miRNA:   3'- -CGaUAGGa-GCG-CUAGCUcuuGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 707 0.66 0.827182
Target:  5'- -aUcgCCUCGUcGUCGAGGGCcgacaggucgggcaGGUGCg -3'
miRNA:   3'- cgAuaGGAGCGcUAGCUCUUG--------------CCGCG- -5'
12943 3' -53.1 NC_003387.1 + 34355 0.66 0.820738
Target:  5'- --cGUCgaCGUGGUCGAGGuCGGCa- -3'
miRNA:   3'- cgaUAGgaGCGCUAGCUCUuGCCGcg -5'
12943 3' -53.1 NC_003387.1 + 3807 0.67 0.811364
Target:  5'- cGCgcacaCCgcaagCGCGAcaacgaUCGucAGGGCGGCGCg -3'
miRNA:   3'- -CGaua--GGa----GCGCU------AGC--UCUUGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.