miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12943 3' -53.1 NC_003387.1 + 29450 1.14 0.000899
Target:  5'- cGCUAUCCUCGCGAUCGAGAACGGCGCc -3'
miRNA:   3'- -CGAUAGGAGCGCUAGCUCUUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 2762 0.78 0.246017
Target:  5'- cGCgagGUCaccgaCGUGAUCGAGcACGGCGCg -3'
miRNA:   3'- -CGa--UAGga---GCGCUAGCUCuUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 41071 0.77 0.252496
Target:  5'- cGCUGUCgaCGCGAUCGAGG--GGCGa -3'
miRNA:   3'- -CGAUAGgaGCGCUAGCUCUugCCGCg -5'
12943 3' -53.1 NC_003387.1 + 48306 0.76 0.30182
Target:  5'- cGCccgCCUCGaCGAaaUCGAG-GCGGCGCg -3'
miRNA:   3'- -CGauaGGAGC-GCU--AGCUCuUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 26662 0.74 0.421661
Target:  5'- gGCgcagCCUCGCGAaugugguacUCGAuguGCGGCGCc -3'
miRNA:   3'- -CGaua-GGAGCGCU---------AGCUcu-UGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 22458 0.74 0.421661
Target:  5'- cGUUggCCUCGCGGuacUCGAcGAccGCGGCGUc -3'
miRNA:   3'- -CGAuaGGAGCGCU---AGCU-CU--UGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 35676 0.74 0.421661
Target:  5'- cGC-GUCCUCGaCGAcgcccggCGAGGGCGGCaGCc -3'
miRNA:   3'- -CGaUAGGAGC-GCUa------GCUCUUGCCG-CG- -5'
12943 3' -53.1 NC_003387.1 + 12326 0.73 0.431259
Target:  5'- aGC-AUCCUCGCGcguAUCGcuAACGGCGa -3'
miRNA:   3'- -CGaUAGGAGCGC---UAGCucUUGCCGCg -5'
12943 3' -53.1 NC_003387.1 + 43683 0.72 0.491374
Target:  5'- cGCgAUCCUgGCgugGAUCGccGACGGCGCc -3'
miRNA:   3'- -CGaUAGGAgCG---CUAGCucUUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 7811 0.72 0.522856
Target:  5'- aGCUGcaacgCCUgGCGGcCGAGGucgccCGGCGCg -3'
miRNA:   3'- -CGAUa----GGAgCGCUaGCUCUu----GCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 36840 0.71 0.533525
Target:  5'- gGCUGUCCUCGUccUCGGGcagccacauguACGcGCGCa -3'
miRNA:   3'- -CGAUAGGAGCGcuAGCUCu----------UGC-CGCG- -5'
12943 3' -53.1 NC_003387.1 + 13185 0.71 0.533525
Target:  5'- cCUggCCgaCGCGAUCGAGAagcGCGGCa- -3'
miRNA:   3'- cGAuaGGa-GCGCUAGCUCU---UGCCGcg -5'
12943 3' -53.1 NC_003387.1 + 44025 0.71 0.576892
Target:  5'- gGCUcGUCgaCGuCGGUCGGcagcggcgugccGAACGGCGCa -3'
miRNA:   3'- -CGA-UAGgaGC-GCUAGCU------------CUUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 1457 0.71 0.576892
Target:  5'- cGUcGUCCUCGuCGAggucgUCGAGGGCcagGGCGUc -3'
miRNA:   3'- -CGaUAGGAGC-GCU-----AGCUCUUG---CCGCG- -5'
12943 3' -53.1 NC_003387.1 + 37358 0.7 0.598883
Target:  5'- cGCUAUCU--GCGGcaccugUCGGGcGGCGGCGCc -3'
miRNA:   3'- -CGAUAGGagCGCU------AGCUC-UUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 42864 0.7 0.598883
Target:  5'- uGCaGUCgaUCaaGGUCGAGGACGGCGa -3'
miRNA:   3'- -CGaUAGg-AGcgCUAGCUCUUGCCGCg -5'
12943 3' -53.1 NC_003387.1 + 19819 0.7 0.627632
Target:  5'- gGCUGUCCggcaccCGCGGgucgaaucaaucucUCGAcGAcgccgacGCGGCGCu -3'
miRNA:   3'- -CGAUAGGa-----GCGCU--------------AGCU-CU-------UGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 27239 0.7 0.632061
Target:  5'- aGCUGaCacgCGCGGUCGAG-GCGGCccgGCa -3'
miRNA:   3'- -CGAUaGga-GCGCUAGCUCuUGCCG---CG- -5'
12943 3' -53.1 NC_003387.1 + 29352 0.7 0.632061
Target:  5'- cGCUucAUCCUCgGCGAccugacCGucAGCGGCGCc -3'
miRNA:   3'- -CGA--UAGGAG-CGCUa-----GCucUUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 45750 0.7 0.632061
Target:  5'- aGUUGUCgUCGCccucGA-CGAGGGCGGCcaGCa -3'
miRNA:   3'- -CGAUAGgAGCG----CUaGCUCUUGCCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.