miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12943 3' -53.1 NC_003387.1 + 29450 1.14 0.000899
Target:  5'- cGCUAUCCUCGCGAUCGAGAACGGCGCc -3'
miRNA:   3'- -CGAUAGGAGCGCUAGCUCUUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 44908 0.68 0.750459
Target:  5'- cGCUAUCCguaUCGCG-UCGccgggcuGGGGCgacgaGGCGCu -3'
miRNA:   3'- -CGAUAGG---AGCGCuAGC-------UCUUG-----CCGCG- -5'
12943 3' -53.1 NC_003387.1 + 42550 0.68 0.751502
Target:  5'- cGCcGagCUgGCGAgCGAGAuUGGCGCg -3'
miRNA:   3'- -CGaUagGAgCGCUaGCUCUuGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 25883 0.66 0.856133
Target:  5'- aGCgg-CCUgGUGcuccccggcGUCcAGGGCGGCGCg -3'
miRNA:   3'- -CGauaGGAgCGC---------UAGcUCUUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 12326 0.73 0.431259
Target:  5'- aGC-AUCCUCGCGcguAUCGcuAACGGCGa -3'
miRNA:   3'- -CGaUAGGAGCGC---UAGCucUUGCCGCg -5'
12943 3' -53.1 NC_003387.1 + 43683 0.72 0.491374
Target:  5'- cGCgAUCCUgGCgugGAUCGccGACGGCGCc -3'
miRNA:   3'- -CGaUAGGAgCG---CUAGCucUUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 13185 0.71 0.533525
Target:  5'- cCUggCCgaCGCGAUCGAGAagcGCGGCa- -3'
miRNA:   3'- cGAuaGGa-GCGCUAGCUCU---UGCCGcg -5'
12943 3' -53.1 NC_003387.1 + 37358 0.7 0.598883
Target:  5'- cGCUAUCU--GCGGcaccugUCGGGcGGCGGCGCc -3'
miRNA:   3'- -CGAUAGGagCGCU------AGCUC-UUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 27239 0.7 0.632061
Target:  5'- aGCUGaCacgCGCGGUCGAG-GCGGCccgGCa -3'
miRNA:   3'- -CGAUaGga-GCGCUAGCUCuUGCCG---CG- -5'
12943 3' -53.1 NC_003387.1 + 22833 0.68 0.741027
Target:  5'- -----gCUCGCGAUCGccaacgcGAuCGGCGCg -3'
miRNA:   3'- cgauagGAGCGCUAGCu------CUuGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 26702 0.69 0.687217
Target:  5'- uGCUcGUCgaCGCcGUCGuGcGCGGCGCg -3'
miRNA:   3'- -CGA-UAGgaGCGcUAGCuCuUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 19819 0.7 0.627632
Target:  5'- gGCUGUCCggcaccCGCGGgucgaaucaaucucUCGAcGAcgccgacGCGGCGCu -3'
miRNA:   3'- -CGAUAGGa-----GCGCU--------------AGCU-CU-------UGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 2762 0.78 0.246017
Target:  5'- cGCgagGUCaccgaCGUGAUCGAGcACGGCGCg -3'
miRNA:   3'- -CGa--UAGga---GCGCUAGCUCuUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 3380 0.68 0.708982
Target:  5'- aGCUggCCUCGgcgggcauccCGAUCGAGcaccugcugucGAUGGUGCc -3'
miRNA:   3'- -CGAuaGGAGC----------GCUAGCUC-----------UUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 41071 0.77 0.252496
Target:  5'- cGCUGUCgaCGCGAUCGAGG--GGCGa -3'
miRNA:   3'- -CGAUAGgaGCGCUAGCUCUugCCGCg -5'
12943 3' -53.1 NC_003387.1 + 42864 0.7 0.598883
Target:  5'- uGCaGUCgaUCaaGGUCGAGGACGGCGa -3'
miRNA:   3'- -CGaUAGg-AGcgCUAGCUCUUGCCGCg -5'
12943 3' -53.1 NC_003387.1 + 24716 0.68 0.73044
Target:  5'- aGCUcgCCaagCGCGugcucgccgaaAUCGAGGGCGcCGCa -3'
miRNA:   3'- -CGAuaGGa--GCGC-----------UAGCUCUUGCcGCG- -5'
12943 3' -53.1 NC_003387.1 + 36817 0.68 0.751502
Target:  5'- uGCUucacgAUCCUgCGUGAgauccCGGcGGCGGCGCu -3'
miRNA:   3'- -CGA-----UAGGA-GCGCUa----GCUcUUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 48306 0.76 0.30182
Target:  5'- cGCccgCCUCGaCGAaaUCGAG-GCGGCGCg -3'
miRNA:   3'- -CGauaGGAGC-GCU--AGCUCuUGCCGCG- -5'
12943 3' -53.1 NC_003387.1 + 7811 0.72 0.522856
Target:  5'- aGCUGcaacgCCUgGCGGcCGAGGucgccCGGCGCg -3'
miRNA:   3'- -CGAUa----GGAgCGCUaGCUCUu----GCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.