miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12943 5' -62.3 NC_003387.1 + 21248 0.66 0.400975
Target:  5'- cGGCAUGGUgcgCCGCGAcgaggagucgggcaaGGUGGcgcaccGCGUCGu -3'
miRNA:   3'- cCCGUGCCG---GGCGCU---------------CUACC------CGCAGC- -5'
12943 5' -62.3 NC_003387.1 + 21710 0.66 0.397502
Target:  5'- -aGCGCGGCCCGCGccGAccUGGuCGUgGa -3'
miRNA:   3'- ccCGUGCCGGGCGCu-CU--ACCcGCAgC- -5'
12943 5' -62.3 NC_003387.1 + 27138 0.66 0.397502
Target:  5'- aGGC-CGuGCCCGcCGGGGUcGGCGcCGc -3'
miRNA:   3'- cCCGuGC-CGGGC-GCUCUAcCCGCaGC- -5'
12943 5' -62.3 NC_003387.1 + 13304 0.66 0.397502
Target:  5'- aGGGCgGCGGCCUcgacggcaGCGAccUGGGCaagacguucguGUCGg -3'
miRNA:   3'- -CCCG-UGCCGGG--------CGCUcuACCCG-----------CAGC- -5'
12943 5' -62.3 NC_003387.1 + 21471 0.66 0.396637
Target:  5'- uGGCGCaGCCCGCGccGGUcGGGCcgggcugguucguGUCGc -3'
miRNA:   3'- cCCGUGcCGGGCGCu-CUA-CCCG-------------CAGC- -5'
12943 5' -62.3 NC_003387.1 + 26660 0.66 0.388905
Target:  5'- cGGGCGCaGCCuCGCGAaugugguacucGAUGugcGGCGcCGu -3'
miRNA:   3'- -CCCGUGcCGG-GCGCU-----------CUAC---CCGCaGC- -5'
12943 5' -62.3 NC_003387.1 + 14718 0.66 0.388905
Target:  5'- cGGuGCACGGCUugcugcgguCGCGcAGccaGGCGUCGa -3'
miRNA:   3'- -CC-CGUGCCGG---------GCGC-UCuacCCGCAGC- -5'
12943 5' -62.3 NC_003387.1 + 30510 0.66 0.388052
Target:  5'- gGGGC-CgGGgCCGCGAGAgcccgcuUGGGUGg-- -3'
miRNA:   3'- -CCCGuG-CCgGGCGCUCU-------ACCCGCagc -5'
12943 5' -62.3 NC_003387.1 + 34057 0.66 0.383805
Target:  5'- uGGgGCGGCCUaaGCGcccaggagcgcaggcGGAUucgcaaagGGGCGUCGg -3'
miRNA:   3'- cCCgUGCCGGG--CGC---------------UCUA--------CCCGCAGC- -5'
12943 5' -62.3 NC_003387.1 + 1445 0.66 0.380431
Target:  5'- aGGGCuCGGggucgucgucCUCGuCGAGGUcgucgagggccaGGGCGUCGa -3'
miRNA:   3'- -CCCGuGCC----------GGGC-GCUCUA------------CCCGCAGC- -5'
12943 5' -62.3 NC_003387.1 + 48245 0.66 0.380431
Target:  5'- cGGGCuCGGCCUucgcgGCGGGcucGGCgGUCGg -3'
miRNA:   3'- -CCCGuGCCGGG-----CGCUCuacCCG-CAGC- -5'
12943 5' -62.3 NC_003387.1 + 5329 0.66 0.380431
Target:  5'- gGGGC-CGGuugcCCCGCGcu-UGcGGUGUCGg -3'
miRNA:   3'- -CCCGuGCC----GGGCGCucuAC-CCGCAGC- -5'
12943 5' -62.3 NC_003387.1 + 22443 0.66 0.380431
Target:  5'- aGGCGCGGgCCGCGGcGUuGGCcUCGc -3'
miRNA:   3'- cCCGUGCCgGGCGCUcUAcCCGcAGC- -5'
12943 5' -62.3 NC_003387.1 + 25009 0.66 0.380431
Target:  5'- gGGGCggcugauaugcaGCGGCCUGuCGGGGUcGGCG-Ca -3'
miRNA:   3'- -CCCG------------UGCCGGGC-GCUCUAcCCGCaGc -5'
12943 5' -62.3 NC_003387.1 + 5523 0.66 0.372081
Target:  5'- cGGCuc-GCCCGCGAGc-GGGCGaaguUCGg -3'
miRNA:   3'- cCCGugcCGGGCGCUCuaCCCGC----AGC- -5'
12943 5' -62.3 NC_003387.1 + 36732 0.66 0.372081
Target:  5'- cGGCcucgACGccGUCUGCGAGcgccUGGGCGUCa -3'
miRNA:   3'- cCCG----UGC--CGGGCGCUCu---ACCCGCAGc -5'
12943 5' -62.3 NC_003387.1 + 33760 0.66 0.363857
Target:  5'- aGGGCaacgGCGGCgCCGCGAGcgGuuuggcccggcuGGUGcCGa -3'
miRNA:   3'- -CCCG----UGCCG-GGCGCUCuaC------------CCGCaGC- -5'
12943 5' -62.3 NC_003387.1 + 38747 0.66 0.363857
Target:  5'- aGGGCAUGcgguucgagauuGCCCGCGA---GGGCGg-- -3'
miRNA:   3'- -CCCGUGC------------CGGGCGCUcuaCCCGCagc -5'
12943 5' -62.3 NC_003387.1 + 45576 0.67 0.347789
Target:  5'- cGGCACGGCCgaG-GAGccGGGCcUCGc -3'
miRNA:   3'- cCCGUGCCGGg-CgCUCuaCCCGcAGC- -5'
12943 5' -62.3 NC_003387.1 + 45967 0.67 0.347789
Target:  5'- aGGGCGaGGCgUGCGcuGUGGGCcuguauGUCGa -3'
miRNA:   3'- -CCCGUgCCGgGCGCucUACCCG------CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.