Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12944 | 3' | -55.9 | NC_003387.1 | + | 8235 | 0.68 | 0.522856 |
Target: 5'- cCGAUCUGCUGCAC---GCGCUgCUGu -3' miRNA: 3'- cGUUAGACGAUGUGcucCGCGGgGAC- -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 27585 | 0.71 | 0.341398 |
Target: 5'- cCGAUCgGCUGCGCGGuGUGCCgCUGg -3' miRNA: 3'- cGUUAGaCGAUGUGCUcCGCGGgGAC- -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 42754 | 0.71 | 0.375671 |
Target: 5'- -gGAUCgGCUGCGCu-GGUGCCCCg- -3' miRNA: 3'- cgUUAGaCGAUGUGcuCCGCGGGGac -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 22951 | 0.71 | 0.384594 |
Target: 5'- cGCAG-CUGaCcGCGUGGGGCGCCCCg- -3' miRNA: 3'- -CGUUaGAC-GaUGUGCUCCGCGGGGac -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 44458 | 0.7 | 0.421661 |
Target: 5'- ------cGCUGCGCGAGGCGCUgCa- -3' miRNA: 3'- cguuagaCGAUGUGCUCCGCGGgGac -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 37358 | 0.7 | 0.421661 |
Target: 5'- cGCuAUCUGCgGCaccugucggGCGGcGGCGCCCCg- -3' miRNA: 3'- -CGuUAGACGaUG---------UGCU-CCGCGGGGac -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 24651 | 0.69 | 0.440984 |
Target: 5'- ----cCUGCUGCGCGAGGuCGCCa--- -3' miRNA: 3'- cguuaGACGAUGUGCUCC-GCGGggac -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 45714 | 0.69 | 0.460799 |
Target: 5'- aGCGGccgagCUGCUGCGCGAcauucugcGGCGCCUg-- -3' miRNA: 3'- -CGUUa----GACGAUGUGCU--------CCGCGGGgac -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 28920 | 0.68 | 0.512271 |
Target: 5'- --uAUCUGCUGCGCGGcGGCGagguucaCgCCUGa -3' miRNA: 3'- cguUAGACGAUGUGCU-CCGCg------G-GGAC- -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 29835 | 1.1 | 0.000645 |
Target: 5'- aGCAAUCUGCUACACGAGGCGCCCCUGu -3' miRNA: 3'- -CGUUAGACGAUGUGCUCCGCGGGGAC- -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 30624 | 0.66 | 0.620989 |
Target: 5'- gGCAAcCUGCgcaagcacaaGCGCGAGaGCGCCUgaGa -3' miRNA: 3'- -CGUUaGACGa---------UGUGCUC-CGCGGGgaC- -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 483 | 0.67 | 0.609926 |
Target: 5'- cGCGAgCUGCUcguCGCGAuGCGCgCCCg- -3' miRNA: 3'- -CGUUaGACGAu--GUGCUcCGCG-GGGac -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 44977 | 0.68 | 0.533525 |
Target: 5'- cGCGAUCgccGCUGCcgcCGAGGCGgUgCUGu -3' miRNA: 3'- -CGUUAGa--CGAUGu--GCUCCGCgGgGAC- -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 15104 | 0.66 | 0.654196 |
Target: 5'- cGCgGAUCgGCgucaACGGGGCGCcugaCCCUGu -3' miRNA: 3'- -CG-UUAGaCGaug-UGCUCCGCG----GGGAC- -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 50520 | 0.67 | 0.565961 |
Target: 5'- ------gGCgaGCACGAGGCaCCCCUGa -3' miRNA: 3'- cguuagaCGa-UGUGCUCCGcGGGGAC- -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 2256 | 0.67 | 0.609926 |
Target: 5'- cCAAgggGCUGCGUG-GGCGCCCCg- -3' miRNA: 3'- cGUUagaCGAUGUGCuCCGCGGGGac -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 18188 | 0.66 | 0.654196 |
Target: 5'- aCGAUCgGCU--GCGAGGUGCgCCUc -3' miRNA: 3'- cGUUAGaCGAugUGCUCCGCGgGGAc -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 37824 | 0.66 | 0.676249 |
Target: 5'- cGCGAUCggGCcgaGCGAGGuCGggcaCCCCUGc -3' miRNA: 3'- -CGUUAGa-CGaugUGCUCC-GC----GGGGAC- -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 36183 | 0.67 | 0.576892 |
Target: 5'- cCGAUCUGCcaccugUACGCGcugcuguGGCGCCUCg- -3' miRNA: 3'- cGUUAGACG------AUGUGCu------CCGCGGGGac -5' |
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12944 | 3' | -55.9 | NC_003387.1 | + | 358 | 0.67 | 0.586769 |
Target: 5'- cGCGGUCgauCUGCGCGAGcgguuccGCGCCCa-- -3' miRNA: 3'- -CGUUAGac-GAUGUGCUC-------CGCGGGgac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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