miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12944 5' -54.9 NC_003387.1 + 44463 0.66 0.776814
Target:  5'- cGCGA-GGCGCUgcaCGcccgcgUGACGGGu -3'
miRNA:   3'- cCGCUcCCGCGAaa-GCaca---ACUGCCC- -5'
12944 5' -54.9 NC_003387.1 + 52599 0.66 0.766814
Target:  5'- cGCGAGGGCGaccgcaUCGa---GGCGGGc -3'
miRNA:   3'- cCGCUCCCGCgaa---AGCacaaCUGCCC- -5'
12944 5' -54.9 NC_003387.1 + 2701 0.66 0.746419
Target:  5'- cGGCGAGGuuGUGCUcggCGacgcgGgcGGCGGGc -3'
miRNA:   3'- -CCGCUCC--CGCGAaa-GCa----CaaCUGCCC- -5'
12944 5' -54.9 NC_003387.1 + 5 0.66 0.736045
Target:  5'- cGCGAgGGGCGCcg-CGaucGUUcGCGGGg -3'
miRNA:   3'- cCGCU-CCCGCGaaaGCa--CAAcUGCCC- -5'
12944 5' -54.9 NC_003387.1 + 27925 0.66 0.736045
Target:  5'- cGGCGuGGGCGCc-UCGgggGggGcucgguCGGGg -3'
miRNA:   3'- -CCGCuCCCGCGaaAGCa--CaaCu-----GCCC- -5'
12944 5' -54.9 NC_003387.1 + 14489 0.66 0.736045
Target:  5'- cGGCGAGGccacuaagggcGCGCUgUCGaucgacccGACGGGc -3'
miRNA:   3'- -CCGCUCC-----------CGCGAaAGCacaa----CUGCCC- -5'
12944 5' -54.9 NC_003387.1 + 17153 0.67 0.711813
Target:  5'- cGGCcAGGGCGCcgaggUaguccaucgcggcgUCGUGcuccUGGCGGGc -3'
miRNA:   3'- -CCGcUCCCGCGa----A--------------AGCACa---ACUGCCC- -5'
12944 5' -54.9 NC_003387.1 + 23688 0.68 0.650285
Target:  5'- cGGCGugagccgaGGGGCGCUgUUUGcUGacuucgGACGGGc -3'
miRNA:   3'- -CCGC--------UCCCGCGA-AAGC-ACaa----CUGCCC- -5'
12944 5' -54.9 NC_003387.1 + 22961 0.68 0.617565
Target:  5'- cGCGuGGGGCGCcccggucaUCGUGUcgGGCGGc -3'
miRNA:   3'- cCGC-UCCCGCGaa------AGCACAa-CUGCCc -5'
12944 5' -54.9 NC_003387.1 + 43830 0.69 0.574151
Target:  5'- cGGCGAGGGCGaggccgaggUCGg---GGCGGu -3'
miRNA:   3'- -CCGCUCCCGCgaa------AGCacaaCUGCCc -5'
12944 5' -54.9 NC_003387.1 + 50988 0.69 0.574151
Target:  5'- cGGcCGGGGGCGUUUUCGUuugcugUGcACGcGGc -3'
miRNA:   3'- -CC-GCUCCCGCGAAAGCAca----AC-UGC-CC- -5'
12944 5' -54.9 NC_003387.1 + 39320 0.69 0.574151
Target:  5'- cGGCGAGGGCGUgc-UGUGaucaccgcGGCGGc -3'
miRNA:   3'- -CCGCUCCCGCGaaaGCACaa------CUGCCc -5'
12944 5' -54.9 NC_003387.1 + 43728 0.69 0.574151
Target:  5'- cGGCGGcaugcGGGagccCGCgagCGUGUUGGCGGc -3'
miRNA:   3'- -CCGCU-----CCC----GCGaaaGCACAACUGCCc -5'
12944 5' -54.9 NC_003387.1 + 46377 0.69 0.556965
Target:  5'- cGCGAcacgguGGGCGCag-CGUGUUGacagcucaacagugcGCGGGu -3'
miRNA:   3'- cCGCU------CCCGCGaaaGCACAAC---------------UGCCC- -5'
12944 5' -54.9 NC_003387.1 + 22662 0.7 0.510568
Target:  5'- cGGCGgccgucAGGGCGCgcUCGUG--GGCGGu -3'
miRNA:   3'- -CCGC------UCCCGCGaaAGCACaaCUGCCc -5'
12944 5' -54.9 NC_003387.1 + 2396 0.71 0.476852
Target:  5'- gGGCGgccugaaugaagucGGGGCGCa-UCGcGUUGACGGc -3'
miRNA:   3'- -CCGC--------------UCCCGCGaaAGCaCAACUGCCc -5'
12944 5' -54.9 NC_003387.1 + 2062 0.71 0.469841
Target:  5'- cGGUGGcGGCGCcaugUUCGUGUgaGAgGGGg -3'
miRNA:   3'- -CCGCUcCCGCGa---AAGCACAa-CUgCCC- -5'
12944 5' -54.9 NC_003387.1 + 9791 0.72 0.393799
Target:  5'- uGGCGGGucGCGCUUUCGac--GACGGGu -3'
miRNA:   3'- -CCGCUCc-CGCGAAAGCacaaCUGCCC- -5'
12944 5' -54.9 NC_003387.1 + 47323 0.74 0.318379
Target:  5'- cGCuuGcGGCGUUUUCGUGUUGACaGGu -3'
miRNA:   3'- cCGcuC-CCGCGAAAGCACAACUGcCC- -5'
12944 5' -54.9 NC_003387.1 + 50550 0.75 0.295772
Target:  5'- uGGCucgGGGGGCGCUUU-GUGUUGACa-- -3'
miRNA:   3'- -CCG---CUCCCGCGAAAgCACAACUGccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.