miRNA display CGI


Results 21 - 40 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12945 3' -55.9 NC_003387.1 + 7172 0.66 0.700707
Target:  5'- cGAGCUGGCGGcGGAuCGCCUugccgcaCGGCCa -3'
miRNA:   3'- uCUCGGUUGCU-CUUuGCGGGg------GCUGG- -5'
12945 3' -55.9 NC_003387.1 + 7181 0.66 0.67806
Target:  5'- cGGGGCCGaucaaGCGGGugguggcgucaauGGugGCCgcggugcugaCCCGGCCg -3'
miRNA:   3'- -UCUCGGU-----UGCUC-------------UUugCGG----------GGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 7526 0.69 0.495444
Target:  5'- gAGGGUgAACGAGAGcggcacuGCuGCCgCCCuGGCCg -3'
miRNA:   3'- -UCUCGgUUGCUCUU-------UG-CGG-GGG-CUGG- -5'
12945 3' -55.9 NC_003387.1 + 7785 0.66 0.700707
Target:  5'- uGAGCCuucGCGAGcgccucguCGCCCCa-GCCc -3'
miRNA:   3'- uCUCGGu--UGCUCuuu-----GCGGGGgcUGG- -5'
12945 3' -55.9 NC_003387.1 + 7826 0.69 0.496469
Target:  5'- -cGGCCGaggucgcccggcGCGcAGGcggaaucgccGACGCCCCCGACg -3'
miRNA:   3'- ucUCGGU------------UGC-UCU----------UUGCGGGGGCUGg -5'
12945 3' -55.9 NC_003387.1 + 7963 0.71 0.407628
Target:  5'- cGGGCCGcuucacggcggGCGGGugcuGCGCuucggcgCCCCGGCCg -3'
miRNA:   3'- uCUCGGU-----------UGCUCuu--UGCG-------GGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 8328 0.67 0.613728
Target:  5'- -cAGCCGcgGCGAGcuuCGCCUcgUCGACCa -3'
miRNA:   3'- ucUCGGU--UGCUCuuuGCGGG--GGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 9367 0.74 0.271654
Target:  5'- cGAGCCGgugGCGGccGAGGCGaCCCCCGAg- -3'
miRNA:   3'- uCUCGGU---UGCU--CUUUGC-GGGGGCUgg -5'
12945 3' -55.9 NC_003387.1 + 9422 0.69 0.506777
Target:  5'- uGGGCCGACGAGuacGACGCgggCgCCGAgCu -3'
miRNA:   3'- uCUCGGUUGCUCu--UUGCG---GgGGCUgG- -5'
12945 3' -55.9 NC_003387.1 + 10986 0.78 0.152035
Target:  5'- -cGGCCAGcCGGGuGACGUCCUCGGCCg -3'
miRNA:   3'- ucUCGGUU-GCUCuUUGCGGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 12179 0.66 0.700707
Target:  5'- --cGCCu-CGGGGGucACGCCCUCGGgCa -3'
miRNA:   3'- ucuCGGuuGCUCUU--UGCGGGGGCUgG- -5'
12945 3' -55.9 NC_003387.1 + 12346 0.7 0.427257
Target:  5'- --cGCCGACGucGAGGCccuuGgCCCCGGCCg -3'
miRNA:   3'- ucuCGGUUGCu-CUUUG----CgGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 12558 0.67 0.624647
Target:  5'- gAGGGCuCGACGAcGAucGgGCCgCCGACg -3'
miRNA:   3'- -UCUCG-GUUGCU-CUu-UgCGGgGGCUGg -5'
12945 3' -55.9 NC_003387.1 + 13465 0.74 0.264867
Target:  5'- aAGGGCCGcgacgGCGAGGAGgGCaCCaCCGACa -3'
miRNA:   3'- -UCUCGGU-----UGCUCUUUgCG-GG-GGCUGg -5'
12945 3' -55.9 NC_003387.1 + 14814 0.69 0.527656
Target:  5'- cGAGCCAcgcgggcaGCGGGu--CGCCCUCGGg- -3'
miRNA:   3'- uCUCGGU--------UGCUCuuuGCGGGGGCUgg -5'
12945 3' -55.9 NC_003387.1 + 14877 0.7 0.436799
Target:  5'- cGAGCCGcCGGGcgcAGGgGUgCCCGACCu -3'
miRNA:   3'- uCUCGGUuGCUC---UUUgCGgGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 15180 0.73 0.300203
Target:  5'- cGAGgugaUCGACGAGGAGgccCGCgCCCGGCCg -3'
miRNA:   3'- uCUC----GGUUGCUCUUU---GCGgGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 15439 0.68 0.570298
Target:  5'- --cGCCGACGAGcgcgccAGGCG-CCuuGACCg -3'
miRNA:   3'- ucuCGGUUGCUC------UUUGCgGGggCUGG- -5'
12945 3' -55.9 NC_003387.1 + 15915 0.71 0.398481
Target:  5'- cGAGCUGGCcgcgauuaucgguGAGAAG-GCCgCCCGGCCg -3'
miRNA:   3'- uCUCGGUUG-------------CUCUUUgCGG-GGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 16070 0.67 0.646495
Target:  5'- cGAGCCggUGAugccacucgGggGCGCCgUCGGgCa -3'
miRNA:   3'- uCUCGGuuGCU---------CuuUGCGGgGGCUgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.