miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12945 3' -55.9 NC_003387.1 + 582 0.71 0.40855
Target:  5'- gAGAuuGCCAACGAGAuugcggcgauuGACGCUCa-GGCCg -3'
miRNA:   3'- -UCU--CGGUUGCUCU-----------UUGCGGGggCUGG- -5'
12945 3' -55.9 NC_003387.1 + 4494 0.71 0.390363
Target:  5'- cGAGCCcGCG-GAGGCcCCgCUCGACCg -3'
miRNA:   3'- uCUCGGuUGCuCUUUGcGG-GGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 39275 0.72 0.322315
Target:  5'- cGAGCUgggcaagcugcucGACGAcGGcaaGCCCCCGGCCg -3'
miRNA:   3'- uCUCGG-------------UUGCU-CUuugCGGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 50445 0.77 0.178879
Target:  5'- --cGCCAGCGAGGacGACGUcgagccgaCCCCGGCCc -3'
miRNA:   3'- ucuCGGUUGCUCU--UUGCG--------GGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 18560 0.69 0.496469
Target:  5'- cGAGCgCAAggcCGAGGgcGACGCCCUgGugCu -3'
miRNA:   3'- uCUCG-GUU---GCUCU--UUGCGGGGgCugG- -5'
12945 3' -55.9 NC_003387.1 + 45379 0.7 0.456244
Target:  5'- --uGCCGGCGGuuAGCuGCgCCCGGCCg -3'
miRNA:   3'- ucuCGGUUGCUcuUUG-CGgGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 43928 0.72 0.364093
Target:  5'- cGAGCUgAGCGGGAAucagguCGCCCgCCG-CCg -3'
miRNA:   3'- uCUCGG-UUGCUCUUu-----GCGGG-GGCuGG- -5'
12945 3' -55.9 NC_003387.1 + 17897 0.8 0.100242
Target:  5'- cGGGCCGuCGAcGAacauucucGACGCCCCCGACUa -3'
miRNA:   3'- uCUCGGUuGCU-CU--------UUGCGGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 41727 0.7 0.456244
Target:  5'- cGGGGCaCGGcCGAG-GACGUCaCCCGGCUg -3'
miRNA:   3'- -UCUCG-GUU-GCUCuUUGCGG-GGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 50958 0.87 0.033592
Target:  5'- --cGCCAGCGcGAAGCGCCCCCGAgCCg -3'
miRNA:   3'- ucuCGGUUGCuCUUUGCGGGGGCU-GG- -5'
12945 3' -55.9 NC_003387.1 + 24764 0.71 0.372713
Target:  5'- -cGGCCAAgcCGAGcacgccGAGCG-CCCCGACCg -3'
miRNA:   3'- ucUCGGUU--GCUC------UUUGCgGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 41099 0.7 0.427257
Target:  5'- uGAGCC-GCGAGcugcuGGCGCUgCaCGACCg -3'
miRNA:   3'- uCUCGGuUGCUCu----UUGCGGgG-GCUGG- -5'
12945 3' -55.9 NC_003387.1 + 4286 0.72 0.355613
Target:  5'- uGGAgGCCGcggGCGAGcAGCGCaCCgCGACCc -3'
miRNA:   3'- -UCU-CGGU---UGCUCuUUGCG-GGgGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 45465 0.72 0.331015
Target:  5'- uGGAGCCAGguuAGGAGCGUuuUCGACCa -3'
miRNA:   3'- -UCUCGGUUgc-UCUUUGCGggGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 9367 0.74 0.271654
Target:  5'- cGAGCCGgugGCGGccGAGGCGaCCCCCGAg- -3'
miRNA:   3'- uCUCGGU---UGCU--CUUUGC-GGGGGCUgg -5'
12945 3' -55.9 NC_003387.1 + 17112 0.76 0.209295
Target:  5'- cGAGCUGGCGGGGgcGACGCucgacgaCCUCGACCg -3'
miRNA:   3'- uCUCGGUUGCUCU--UUGCG-------GGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 45066 0.69 0.506777
Target:  5'- cGAGCgCGuCGAGGGcCGUCCUgGGCCg -3'
miRNA:   3'- uCUCG-GUuGCUCUUuGCGGGGgCUGG- -5'
12945 3' -55.9 NC_003387.1 + 7826 0.69 0.496469
Target:  5'- -cGGCCGaggucgcccggcGCGcAGGcggaaucgccGACGCCCCCGACg -3'
miRNA:   3'- ucUCGGU------------UGC-UCU----------UUGCGGGGGCUGg -5'
12945 3' -55.9 NC_003387.1 + 7526 0.69 0.495444
Target:  5'- gAGGGUgAACGAGAGcggcacuGCuGCCgCCCuGGCCg -3'
miRNA:   3'- -UCUCGgUUGCUCUU-------UG-CGG-GGG-CUGG- -5'
12945 3' -55.9 NC_003387.1 + 49305 0.7 0.456244
Target:  5'- cGAGCaCGcCGAGGGcACGgCCCCGAgCa -3'
miRNA:   3'- uCUCG-GUuGCUCUU-UGCgGGGGCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.