miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12945 3' -55.9 NC_003387.1 + 30658 1.11 0.000658
Target:  5'- gAGAGCCAACGAGAAACGCCCCCGACCc -3'
miRNA:   3'- -UCUCGGUUGCUCUUUGCGGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 50958 0.87 0.033592
Target:  5'- --cGCCAGCGcGAAGCGCCCCCGAgCCg -3'
miRNA:   3'- ucuCGGUUGCuCUUUGCGGGGGCU-GG- -5'
12945 3' -55.9 NC_003387.1 + 17897 0.8 0.100242
Target:  5'- cGGGCCGuCGAcGAacauucucGACGCCCCCGACUa -3'
miRNA:   3'- uCUCGGUuGCU-CU--------UUGCGGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 1734 0.79 0.132515
Target:  5'- -cAGCaAACGA-AAACGCCCCCGGCCg -3'
miRNA:   3'- ucUCGgUUGCUcUUUGCGGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 10986 0.78 0.152035
Target:  5'- -cGGCCAGcCGGGuGACGUCCUCGGCCg -3'
miRNA:   3'- ucUCGGUU-GCUCuUUGCGGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 50445 0.77 0.178879
Target:  5'- --cGCCAGCGAGGacGACGUcgagccgaCCCCGGCCc -3'
miRNA:   3'- ucuCGGUUGCUCU--UUGCG--------GGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 17112 0.76 0.209295
Target:  5'- cGAGCUGGCGGGGgcGACGCucgacgaCCUCGACCg -3'
miRNA:   3'- uCUCGGUUGCUCU--UUGCG-------GGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 1349 0.75 0.215438
Target:  5'- --cGCCGACGAG-GACGCcgaCCCCGACg -3'
miRNA:   3'- ucuCGGUUGCUCuUUGCG---GGGGCUGg -5'
12945 3' -55.9 NC_003387.1 + 13465 0.74 0.264867
Target:  5'- aAGGGCCGcgacgGCGAGGAGgGCaCCaCCGACa -3'
miRNA:   3'- -UCUCGGU-----UGCUCUUUgCG-GG-GGCUGg -5'
12945 3' -55.9 NC_003387.1 + 9367 0.74 0.271654
Target:  5'- cGAGCCGgugGCGGccGAGGCGaCCCCCGAg- -3'
miRNA:   3'- uCUCGGU---UGCU--CUUUGC-GGGGGCUgg -5'
12945 3' -55.9 NC_003387.1 + 22201 0.73 0.285647
Target:  5'- uGGGCCAcccaaGCGGGcucucGCGgCCCCGGCCc -3'
miRNA:   3'- uCUCGGU-----UGCUCuu---UGCgGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 30071 0.73 0.289954
Target:  5'- cAGGGCCAGCGAGcauGCGCUCagucgucggcgggCGGCCa -3'
miRNA:   3'- -UCUCGGUUGCUCuu-UGCGGGg------------GCUGG- -5'
12945 3' -55.9 NC_003387.1 + 15180 0.73 0.300203
Target:  5'- cGAGgugaUCGACGAGGAGgccCGCgCCCGGCCg -3'
miRNA:   3'- uCUC----GGUUGCUCUUU---GCGgGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 22571 0.73 0.300203
Target:  5'- cGGGCCugguCGAGGGugGCCUCgGugCg -3'
miRNA:   3'- uCUCGGuu--GCUCUUugCGGGGgCugG- -5'
12945 3' -55.9 NC_003387.1 + 39275 0.72 0.322315
Target:  5'- cGAGCUgggcaagcugcucGACGAcGGcaaGCCCCCGGCCg -3'
miRNA:   3'- uCUCGG-------------UUGCU-CUuugCGGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 45465 0.72 0.331015
Target:  5'- uGGAGCCAGguuAGGAGCGUuuUCGACCa -3'
miRNA:   3'- -UCUCGGUUgc-UCUUUGCGggGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 3631 0.72 0.339073
Target:  5'- cGGGCguGCGGGuauCGCCgUCGACCg -3'
miRNA:   3'- uCUCGguUGCUCuuuGCGGgGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 52646 0.72 0.339073
Target:  5'- cGAGCCAGC---AAACGCCCgCGGCg -3'
miRNA:   3'- uCUCGGUUGcucUUUGCGGGgGCUGg -5'
12945 3' -55.9 NC_003387.1 + 51502 0.72 0.355613
Target:  5'- aGGAGCagcuCGACGAGccAUGCCCCgucgaCGGCCa -3'
miRNA:   3'- -UCUCG----GUUGCUCuuUGCGGGG-----GCUGG- -5'
12945 3' -55.9 NC_003387.1 + 4286 0.72 0.355613
Target:  5'- uGGAgGCCGcggGCGAGcAGCGCaCCgCGACCc -3'
miRNA:   3'- -UCU-CGGU---UGCUCuUUGCG-GGgGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.