miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12945 3' -55.9 NC_003387.1 + 47693 0.66 0.688874
Target:  5'- aGGAGCCcACGAGAugaccaaccacauGACaccggcgcagGCCCgcagaaucgcgaCCGACCu -3'
miRNA:   3'- -UCUCGGuUGCUCU-------------UUG----------CGGG------------GGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 31733 0.66 0.686715
Target:  5'- --cGCCGACGAGAGcuaucgcggcauucGCggcguugcccGCCCCUGcCCg -3'
miRNA:   3'- ucuCGGUUGCUCUU--------------UG----------CGGGGGCuGG- -5'
12945 3' -55.9 NC_003387.1 + 17707 0.66 0.679144
Target:  5'- cGGGCagcaaguuCGAGGcgguGCGCCCCggccCGGCCg -3'
miRNA:   3'- uCUCGguu-----GCUCUu---UGCGGGG----GCUGG- -5'
12945 3' -55.9 NC_003387.1 + 5960 0.66 0.679144
Target:  5'- --cGCCGaaccGCGAGu--CGCUcgaCCCGGCCg -3'
miRNA:   3'- ucuCGGU----UGCUCuuuGCGG---GGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 41334 0.66 0.679144
Target:  5'- -cGGCCAGCGuGGcgccgauCGCCgcaaacgacgaCCCGGCCg -3'
miRNA:   3'- ucUCGGUUGCuCUuu-----GCGG-----------GGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 18826 0.66 0.679144
Target:  5'- cAGAucGCCGACGGGu--CGCCgCCCauGugCa -3'
miRNA:   3'- -UCU--CGGUUGCUCuuuGCGG-GGG--CugG- -5'
12945 3' -55.9 NC_003387.1 + 7181 0.66 0.67806
Target:  5'- cGGGGCCGaucaaGCGGGugguggcgucaauGGugGCCgcggugcugaCCCGGCCg -3'
miRNA:   3'- -UCUCGGU-----UGCUC-------------UUugCGG----------GGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 5122 0.66 0.67806
Target:  5'- cGAGCUgaucgccgcacgcGACGAGggGCGCUCggcgCCGGUCg -3'
miRNA:   3'- uCUCGG-------------UUGCUCuuUGCGGG----GGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 16683 0.66 0.676976
Target:  5'- -aAGCUgcauuacGACGAGAAcACGCCCaagacguUCGACCu -3'
miRNA:   3'- ucUCGG-------UUGCUCUU-UGCGGG-------GGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 23333 0.66 0.675892
Target:  5'- -cGGCgGGCGAGAucgaggucgucaccGGCGCCgCUGACg -3'
miRNA:   3'- ucUCGgUUGCUCU--------------UUGCGGgGGCUGg -5'
12945 3' -55.9 NC_003387.1 + 32532 0.66 0.672637
Target:  5'- -cGGCCGuGCGAGGcgcagcagcgcaucaAccGCGCCCUCGACg -3'
miRNA:   3'- ucUCGGU-UGCUCU---------------U--UGCGGGGGCUGg -5'
12945 3' -55.9 NC_003387.1 + 43956 0.66 0.668291
Target:  5'- -uGGUCGucgaucuugACG-GuuACGCCCUCGACCg -3'
miRNA:   3'- ucUCGGU---------UGCuCuuUGCGGGGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 34127 0.66 0.668291
Target:  5'- gAGcGCCAcCGAGGcgGGCGaCCCUGACg -3'
miRNA:   3'- -UCuCGGUuGCUCU--UUGCgGGGGCUGg -5'
12945 3' -55.9 NC_003387.1 + 5673 0.66 0.668291
Target:  5'- cGGGGUaaAACGAGcgccACGCCucaugCCCGGCCg -3'
miRNA:   3'- -UCUCGg-UUGCUCuu--UGCGG-----GGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 23862 0.66 0.667203
Target:  5'- cGGGGCCGugGAccGGCGaCCCgguguggCUGGCCg -3'
miRNA:   3'- -UCUCGGUugCUcuUUGC-GGG-------GGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 46007 0.66 0.657404
Target:  5'- cGAGUCGACGGuGAACuGCCCgCgGugCa -3'
miRNA:   3'- uCUCGGUUGCUcUUUG-CGGG-GgCugG- -5'
12945 3' -55.9 NC_003387.1 + 40767 0.66 0.657404
Target:  5'- cGAGUaCAcCGAGguGCGCC-UCGACCa -3'
miRNA:   3'- uCUCG-GUuGCUCuuUGCGGgGGCUGG- -5'
12945 3' -55.9 NC_003387.1 + 42553 0.66 0.657404
Target:  5'- cGAGCUggcgAGCGAGAuuGGCGCgCaCCUGcACCu -3'
miRNA:   3'- uCUCGG----UUGCUCU--UUGCG-G-GGGC-UGG- -5'
12945 3' -55.9 NC_003387.1 + 41716 0.66 0.657404
Target:  5'- cGAGCCAACGA--AACuGCCgCCCauACCc -3'
miRNA:   3'- uCUCGGUUGCUcuUUG-CGG-GGGc-UGG- -5'
12945 3' -55.9 NC_003387.1 + 45774 0.66 0.657404
Target:  5'- -cGGCCAGCaGGGugcccucACGCaCCCCGAUa -3'
miRNA:   3'- ucUCGGUUG-CUCuu-----UGCG-GGGGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.