miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12945 5' -59.7 NC_003387.1 + 11865 0.66 0.508171
Target:  5'- gCGGCGGGGGCcauGUggUUGUG-GCa-- -3'
miRNA:   3'- gGCCGCCCCCG---CAaaAGCACgCGgac -5'
12945 5' -59.7 NC_003387.1 + 37762 0.66 0.48817
Target:  5'- cUCGGCGaccucaaGGGCGUgcUCaagcGCGCCUGg -3'
miRNA:   3'- -GGCCGCc------CCCGCAaaAGca--CGCGGAC- -5'
12945 5' -59.7 NC_003387.1 + 5854 0.66 0.478309
Target:  5'- -aGGUGGGGGCGccgcaaccgUCcugGUGCGCUUc -3'
miRNA:   3'- ggCCGCCCCCGCaaa------AG---CACGCGGAc -5'
12945 5' -59.7 NC_003387.1 + 22660 0.67 0.458888
Target:  5'- cCCGGCGGccgucaGGGCGcgcUCGUGgGCg-- -3'
miRNA:   3'- -GGCCGCC------CCCGCaaaAGCACgCGgac -5'
12945 5' -59.7 NC_003387.1 + 29869 0.67 0.457928
Target:  5'- gUCGGCGaGGGCGcUUUCGUGUugacgggucaacaGCCc- -3'
miRNA:   3'- -GGCCGCcCCCGCaAAAGCACG-------------CGGac -5'
12945 5' -59.7 NC_003387.1 + 27937 0.67 0.439895
Target:  5'- cUCGGgGGGGGCucggUCGggGCGCUc- -3'
miRNA:   3'- -GGCCgCCCCCGcaaaAGCa-CGCGGac -5'
12945 5' -59.7 NC_003387.1 + 23957 0.67 0.425028
Target:  5'- aCGGCGacaugggccgcuuguGGGGCGUg---GUGUGCCa- -3'
miRNA:   3'- gGCCGC---------------CCCCGCAaaagCACGCGGac -5'
12945 5' -59.7 NC_003387.1 + 31317 0.67 0.421358
Target:  5'- gCCGcCGGGGGCGUUggCGUccaaggcauuaGCGCg-- -3'
miRNA:   3'- -GGCcGCCCCCGCAAaaGCA-----------CGCGgac -5'
12945 5' -59.7 NC_003387.1 + 4134 0.67 0.41589
Target:  5'- gCGGCGGGcuuuugggucggcgaGGCGggcgUCGaUGCacGCCUGg -3'
miRNA:   3'- gGCCGCCC---------------CCGCaaa-AGC-ACG--CGGAC- -5'
12945 5' -59.7 NC_003387.1 + 52542 0.68 0.4033
Target:  5'- gCUGGCGGccGGGCGUcacUUUCGUgaccgaGCGCgaGu -3'
miRNA:   3'- -GGCCGCC--CCCGCA---AAAGCA------CGCGgaC- -5'
12945 5' -59.7 NC_003387.1 + 44872 0.68 0.377151
Target:  5'- gCCGuCGGGGGCGUcggCGauucCGCCUGc -3'
miRNA:   3'- -GGCcGCCCCCGCAaaaGCac--GCGGAC- -5'
12945 5' -59.7 NC_003387.1 + 37180 0.68 0.377151
Target:  5'- uCCGGCGGGcugaaaGGCGU-----UGCGCCg- -3'
miRNA:   3'- -GGCCGCCC------CCGCAaaagcACGCGGac -5'
12945 5' -59.7 NC_003387.1 + 49205 0.69 0.352169
Target:  5'- gCGGCGGGGGCacug----GCGCCg- -3'
miRNA:   3'- gGCCGCCCCCGcaaaagcaCGCGGac -5'
12945 5' -59.7 NC_003387.1 + 29045 0.69 0.344106
Target:  5'- cUCGGCucacgccgGGGGGCGUUUcggCGUuucuaGgGCCUGu -3'
miRNA:   3'- -GGCCG--------CCCCCGCAAAa--GCA-----CgCGGAC- -5'
12945 5' -59.7 NC_003387.1 + 22176 0.7 0.277577
Target:  5'- cCCaGGCGGGGGCGgcgguaUCGggUGgGCCa- -3'
miRNA:   3'- -GG-CCGCCCCCGCaaa---AGC--ACgCGGac -5'
12945 5' -59.7 NC_003387.1 + 22058 0.72 0.227417
Target:  5'- aCCGGguCGGGGGCGUUUcUCGUuggcucucagGCGCUc- -3'
miRNA:   3'- -GGCC--GCCCCCGCAAA-AGCA----------CGCGGac -5'
12945 5' -59.7 NC_003387.1 + 50987 0.77 0.089547
Target:  5'- gCGGcCGGGGGCGUUUUCGUuuGCUg- -3'
miRNA:   3'- gGCC-GCCCCCGCAAAAGCAcgCGGac -5'
12945 5' -59.7 NC_003387.1 + 21942 0.8 0.062395
Target:  5'- gCGGCGGGGGCGg---CGgcagGCGUCUGc -3'
miRNA:   3'- gGCCGCCCCCGCaaaaGCa---CGCGGAC- -5'
12945 5' -59.7 NC_003387.1 + 30692 1.09 0.000398
Target:  5'- aCCGGCGGGGGCGUUUUCGUGCGCCUGc -3'
miRNA:   3'- -GGCCGCCCCCGCAAAAGCACGCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.