Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12945 | 5' | -59.7 | NC_003387.1 | + | 30692 | 1.09 | 0.000398 |
Target: 5'- aCCGGCGGGGGCGUUUUCGUGCGCCUGc -3' miRNA: 3'- -GGCCGCCCCCGCAAAAGCACGCGGAC- -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 21942 | 0.8 | 0.062395 |
Target: 5'- gCGGCGGGGGCGg---CGgcagGCGUCUGc -3' miRNA: 3'- gGCCGCCCCCGCaaaaGCa---CGCGGAC- -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 50987 | 0.77 | 0.089547 |
Target: 5'- gCGGcCGGGGGCGUUUUCGUuuGCUg- -3' miRNA: 3'- gGCC-GCCCCCGCAAAAGCAcgCGGac -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 22058 | 0.72 | 0.227417 |
Target: 5'- aCCGGguCGGGGGCGUUUcUCGUuggcucucagGCGCUc- -3' miRNA: 3'- -GGCC--GCCCCCGCAAA-AGCA----------CGCGGac -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 22176 | 0.7 | 0.277577 |
Target: 5'- cCCaGGCGGGGGCGgcgguaUCGggUGgGCCa- -3' miRNA: 3'- -GG-CCGCCCCCGCaaa---AGC--ACgCGGac -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 49205 | 0.69 | 0.352169 |
Target: 5'- gCGGCGGGGGCacug----GCGCCg- -3' miRNA: 3'- gGCCGCCCCCGcaaaagcaCGCGGac -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 29045 | 0.69 | 0.344106 |
Target: 5'- cUCGGCucacgccgGGGGGCGUUUcggCGUuucuaGgGCCUGu -3' miRNA: 3'- -GGCCG--------CCCCCGCAAAa--GCA-----CgCGGAC- -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 37180 | 0.68 | 0.377151 |
Target: 5'- uCCGGCGGGcugaaaGGCGU-----UGCGCCg- -3' miRNA: 3'- -GGCCGCCC------CCGCAaaagcACGCGGac -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 44872 | 0.68 | 0.377151 |
Target: 5'- gCCGuCGGGGGCGUcggCGauucCGCCUGc -3' miRNA: 3'- -GGCcGCCCCCGCAaaaGCac--GCGGAC- -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 52542 | 0.68 | 0.4033 |
Target: 5'- gCUGGCGGccGGGCGUcacUUUCGUgaccgaGCGCgaGu -3' miRNA: 3'- -GGCCGCC--CCCGCA---AAAGCA------CGCGgaC- -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 4134 | 0.67 | 0.41589 |
Target: 5'- gCGGCGGGcuuuugggucggcgaGGCGggcgUCGaUGCacGCCUGg -3' miRNA: 3'- gGCCGCCC---------------CCGCaaa-AGC-ACG--CGGAC- -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 23957 | 0.67 | 0.425028 |
Target: 5'- aCGGCGacaugggccgcuuguGGGGCGUg---GUGUGCCa- -3' miRNA: 3'- gGCCGC---------------CCCCGCAaaagCACGCGGac -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 22660 | 0.67 | 0.458888 |
Target: 5'- cCCGGCGGccgucaGGGCGcgcUCGUGgGCg-- -3' miRNA: 3'- -GGCCGCC------CCCGCaaaAGCACgCGgac -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 27937 | 0.67 | 0.439895 |
Target: 5'- cUCGGgGGGGGCucggUCGggGCGCUc- -3' miRNA: 3'- -GGCCgCCCCCGcaaaAGCa-CGCGGac -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 31317 | 0.67 | 0.421358 |
Target: 5'- gCCGcCGGGGGCGUUggCGUccaaggcauuaGCGCg-- -3' miRNA: 3'- -GGCcGCCCCCGCAAaaGCA-----------CGCGgac -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 29869 | 0.67 | 0.457928 |
Target: 5'- gUCGGCGaGGGCGcUUUCGUGUugacgggucaacaGCCc- -3' miRNA: 3'- -GGCCGCcCCCGCaAAAGCACG-------------CGGac -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 37762 | 0.66 | 0.48817 |
Target: 5'- cUCGGCGaccucaaGGGCGUgcUCaagcGCGCCUGg -3' miRNA: 3'- -GGCCGCc------CCCGCAaaAGca--CGCGGAC- -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 5854 | 0.66 | 0.478309 |
Target: 5'- -aGGUGGGGGCGccgcaaccgUCcugGUGCGCUUc -3' miRNA: 3'- ggCCGCCCCCGCaaa------AG---CACGCGGAc -5' |
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12945 | 5' | -59.7 | NC_003387.1 | + | 11865 | 0.66 | 0.508171 |
Target: 5'- gCGGCGGGGGCcauGUggUUGUG-GCa-- -3' miRNA: 3'- gGCCGCCCCCG---CAaaAGCACgCGgac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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