miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12946 3' -52.1 NC_003387.1 + 23096 0.66 0.857288
Target:  5'- gCCGUcgcGCGUgcGGUGCAcCGAcugauacccGACAUAGUc -3'
miRNA:   3'- -GGCA---UGCA--CCACGU-GCU---------CUGUAUCGa -5'
12946 3' -52.1 NC_003387.1 + 34274 0.66 0.848694
Target:  5'- gUCGgGCGUcacGGUGCGCGcGuacACGUGGCUg -3'
miRNA:   3'- -GGCaUGCA---CCACGUGCuC---UGUAUCGA- -5'
12946 3' -52.1 NC_003387.1 + 24857 0.67 0.812053
Target:  5'- -gGUGCGUGGUgGCugGcucgaccucGGGCgGUGGCUg -3'
miRNA:   3'- ggCAUGCACCA-CGugC---------UCUG-UAUCGA- -5'
12946 3' -52.1 NC_003387.1 + 32274 0.67 0.802376
Target:  5'- gCCGacaagGCGUGGggGCGCGAGgaGCAccGGCg -3'
miRNA:   3'- -GGCa----UGCACCa-CGUGCUC--UGUa-UCGa -5'
12946 3' -52.1 NC_003387.1 + 18523 0.68 0.792514
Target:  5'- aCCGcgACGUGGcgcuguggcuugUGCGCGAGuCGUucgAGCg -3'
miRNA:   3'- -GGCa-UGCACC------------ACGUGCUCuGUA---UCGa -5'
12946 3' -52.1 NC_003387.1 + 50249 0.68 0.772281
Target:  5'- gCCGUACGUcagcgccgggcGGUGCACcucGGCcUGGCg -3'
miRNA:   3'- -GGCAUGCA-----------CCACGUGcu-CUGuAUCGa -5'
12946 3' -52.1 NC_003387.1 + 5282 0.68 0.761933
Target:  5'- gCCGUaaACGUGGguguugUGCAUGAGGCccuccucgGGCUc -3'
miRNA:   3'- -GGCA--UGCACC------ACGUGCUCUGua------UCGA- -5'
12946 3' -52.1 NC_003387.1 + 8851 0.68 0.751447
Target:  5'- aCCGUGCGcgaUGGccCACGcGAUAUAGCa -3'
miRNA:   3'- -GGCAUGC---ACCacGUGCuCUGUAUCGa -5'
12946 3' -52.1 NC_003387.1 + 737 0.69 0.719279
Target:  5'- cCUGgcCGUcGGUGCGCGcGACGUguGGCg -3'
miRNA:   3'- -GGCauGCA-CCACGUGCuCUGUA--UCGa -5'
12946 3' -52.1 NC_003387.1 + 47036 0.7 0.686304
Target:  5'- cCCGgcCGg---GCAUGAGGCGUGGCg -3'
miRNA:   3'- -GGCauGCaccaCGUGCUCUGUAUCGa -5'
12946 3' -52.1 NC_003387.1 + 5817 0.7 0.652843
Target:  5'- gCGUGCGgccGUGCACGAcGACcucgGGCUg -3'
miRNA:   3'- gGCAUGCac-CACGUGCU-CUGua--UCGA- -5'
12946 3' -52.1 NC_003387.1 + 30823 1.11 0.001697
Target:  5'- gCCGUACGUGGUGCACGAGACAUAGCUg -3'
miRNA:   3'- -GGCAUGCACCACGUGCUCUGUAUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.